Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000033.1:716958-721676[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.037 3.2 9.2 0.2 2 23 564 586 563 586 0.95

2 15 0.00038 0.033 15.4 0.3 1 23 592 615 592 615 0.97

3 15 0.00023 0.02 16.1 0.7 3 23 625 645 624 645 0.97

4 15 0.00016 0.014 16.6 0.6 1 23 653 675 653 675 0.97

5 15 0.0012 0.11 13.8 3.0 1 23 683 705 683 705 0.98

6 15 9.5e-05 0.0082 17.3 0.3 1 23 710 732 710 732 0.97

7 15 1.6e-05 0.0014 19.7 4.7 1 23 740 762 740 762 0.98

8 15 0.057 4.9 8.6 3.0 1 23 768 791 768 791 0.98

9 15 0.00042 0.036 15.3 3.8 1 23 829 852 829 852 0.93

10 15 2.6e-05 0.0022 19.1 2.2 3 23 860 880 858 880 0.96

11 15 9.4e-05 0.0081 17.3 0.7 3 23 888 908 886 908 0.96

12 15 0.00012 0.01 17.0 0.3 1 23 914 936 914 936 0.97

13 15 0.00056 0.048 14.9 2.0 2 21 947 966 946 968 0.92

14 15 4.2e-05 0.0036 18.4 2.4 1 23 974 996 974 996 0.99

15 15 0.00074 0.064 14.5 3.8 1 23 1002 1025 1002 1025 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.037	3.2	9.2	0.2	2	23	564	586	563	586	0.95
2	15	0.00038	0.033	15.4	0.3	1	23	592	615	592	615	0.97
3	15	0.00023	0.02	16.1	0.7	3	23	625	645	624	645	0.97
4	15	0.00016	0.014	16.6	0.6	1	23	653	675	653	675	0.97
5	15	0.0012	0.11	13.8	3.0	1	23	683	705	683	705	0.98
6	15	9.5e-05	0.0082	17.3	0.3	1	23	710	732	710	732	0.97
7	15	1.6e-05	0.0014	19.7	4.7	1	23	740	762	740	762	0.98
8	15	0.057	4.9	8.6	3.0	1	23	768	791	768	791	0.98
9	15	0.00042	0.036	15.3	3.8	1	23	829	852	829	852	0.93
10	15	2.6e-05	0.0022	19.1	2.2	3	23	860	880	858	880	0.96
11	15	9.4e-05	0.0081	17.3	0.7	3	23	888	908	886	908	0.96
12	15	0.00012	0.01	17.0	0.3	1	23	914	936	914	936	0.97
13	15	0.00056	0.048	14.9	2.0	2	21	947	966	946	968	0.92
14	15	4.2e-05	0.0036	18.4	2.4	1	23	974	996	974	996	0.99
15	15	0.00074	0.064	14.5	3.8	1	23	1002	1025	1002	1025	0.98

Sequence Information

Coding Sequence: ATGGGAACCTTATACTTAGGAGTGAATAAATTCCTCACAGCTCTCAGTGATGTGATCAATATGATGATGGATTTGGGCATTCTGTCATCCCATGTTTTCTCATATAGCGTAGCACAAGATTTATCAAATATGGTAGTGGACGAGAGGCACCTTGAATCCTTCTCAAAATTTCTGAAAGAAGCTAAGGATATGCTGGATCATTTGAGTGATCAAATATCCCACCGTAACAAGGAGGGGTTTGAAGACATAGTCCTTGGATTTCAGGGTAGATCCTCTATAGTCACTGATCCTATTGATGTAAATGCTTCATGCAACTCTGAAGGAAAATCACATGAAAACTCATTTACATCTACTTGTGGAACTGCCACATATGCTCAAATGAAAACTGCATCAGCATTAGATGTTGGATTCAGCTCGGCATCACAACAGCGGTATGGGAGTATGAATGATGCAGGATGCGAAATGTCAACCGGAAGATTCTCACCATTGAATGAAACACAGTTTAATACTGCCAGTGCTCTCTCTCGTAATCGTCATTATGCTGTGCCTGACAATAGCTCTTGCTATGACGTAACAGCATCATCTGTTGGTCATGATAACTCATTGTCATCACATAGTGCAGCATTCAACCTTCCAAACCATATGGTTGTTAACTCCCATTTTCAGACAAATTGTGAATCTGCCTTTGATGGGCCTGCAAACCCTATGATGCATTTTACTACTTGCAGTCAAGATACGTCACTGAAACAATTTTCATCAACTGGTGAATCACAAAACCATGACAGGCAGTATGTCTCACATGACAAAAGTCAAGATTTCTCTTCAAAGCCCAGCTGTGAGTTTGCACAGCCTAATGATACAAGAGATTCTCAGCGATTTACCTCTCCACAAGGACATTTTTCCCCTCCTACTGAATCAAACTGTGATACTATGTATGGTTCTCGCTGTGAAACAACTCAAGATGCTCACTTTAGCTGTGACACTTCATATGAAACTTCCAACCATTCTGCTCATGGTATGCATTCCTCTGGTGTACCATTTCAGACTTCTACTGAACAGTCACTAAATACTCACTATTCTCATCCATCTTTATCTGCTGAATCAAATTTTGGGGTTCAACCGAAGAATCAGCATGCATCAGCCTTTTCTATGGTAACTGCCATAAATTCAGCTCAGTTTGCATCCTGTCAAAGCAGTAGTGAGAAATCTCAATTCGCATCCACTGAAAATGGTCAAAGTAAAATGCACTATTCTCAACGAAACACTATGTGTGAGCCATTTCCACAAATGAATGGGAATAACAGTTTTGTTGAAATGAGCAATGATTCACATAACACCCATGTTACTGCAAGAGGTGTCAGTGAAATGAAATATCCTCATGTATCTAGCTTTAAGTGGGGTGTCTTAAGTGAAACAGAAGACAGTTTTGACCCAAGTTCTCCAGTTCAAACATCTAACCAGACTCAAGACAGCACAGAATTTGGAGATTTGCAAATAGCCTTTCCCAATCAAGTTGGAAAGGATGGTTCAAATCTAAAAAGAGATGAAACTAGTAAAGATACACTTGCAACATCAGGAGAAAACAGTTTTGCATTTCTGCTGGGAACCAGAGATCCCATGAGCTGTGATGATATGAGTAAGAAGAAATTGGATATCTTTGAGGGAGTAAAACAGGAGGGTGGGAAATGGAAATGCCCAGTCTGTGCAAAATTATTTATTGCCCGAGTTAATTTTGAGAGACATTTTAAAGTTCAACATCTAGGTGAAAAAGCATTCCCTTGTAATTTGTGTGACAAAGGATTTTCTAGTAAGATTCGTCTTGATGCGCATCTAATGAGACAGCATAATCTAAATTGTGAATCAGCAAACCCATGCACTGTTTGTGGGAAATTGTTTAACACAAAAACAGCGTTGAAAACACATAGTCTTACTCATGTGGATGAAAGTGAGAAACCGTTTGCTTGTAACATCTGCAATAAGAGATTTTCCCAAAAGGTTGTTTTAGACACACATCTTCTGAGACATGGAGGTCCTAGTTCTTATAAGTTTCAATGCAAAATGTGTTCTAAAAGTTTTCCAACAAAACCAAAACTTAAGTTTCATTGGAGGAAGCATGAAACTGCCCAATTTCATTGTAAAGAATGTCCTAAAGAATTTCCCAACGAAGGTCTTTTACGAGCACATGAAGCAACTCATGTTGCCTTTTCTGAACGCCCTTTTCAGTGTTCAGAGTGCCCAAAGACTTTCACCACTAAACATAAATTACAATCACACTTTGAGACACACAGTCAGACCAATCAATATTCTTGTGAAGAGTGTTCGTCTGTCTTCAAATGTCGGAGCACATTAGTAGCTCACACAAGAAAGCGACACCAGAAATCTGAAAGACTTCTTCCTGACTCAACCCCTGACTGCTCTGATCCCAGTACAACTTTCCCTCCATCACAGCTGGAACCACCTCAAACTCTTCCTGCAGATACCACATTCAAGTGTTCAATATGTCTCAAAGAGtttcgtcgaaaaaaaaatttacgagaGCATGAAATCAACTGTCATCAGGAAGTGCCTCGATTAGCCTGTGATCATTGCCCTAAACGATTTAAGTCAAAAACCAAATTAAAAATTCATCTTGCAACCCACACTGAGGAGCCAAGTTTGGCTTGCAGAACATGTGGCAAAAGGTTTTATCGCTCTGATTTGCTTCGAACTCATGAAGCTACTCACACCGGAAACAAACCATTCTCGTGTGATGTTTGTGCTCGGAGGTTTGCCACTCAGTCAATGTTAAGATCTCATCAAGTAATCCATCAACCCCCACCAGAGACGTCAGCTGAAGTTCCATGTCCCACATGTGGTAaaaaATTTAAGAATAAGCGGACTCTAGCCCTTCATGTGAAATGTCATGCAGATTCATTAGAGTTTAAATGTGGAACCTGTGGGAAACAATTTGCGCGTCGGGTGCATTATGATGGACATATGAGAACACACAGTGCAGATCGTCCATACTCATGTACTGTTTGCAACCGGACCTTCCGCGAGCGCAAGCACAGGGCTGATCACATGAGACGTTTGCACCCTAATGAAATTCTTGGGGGTGGTGAATTAACCCTCCAGAAGTTAATTGATTCAATTTCTGCTGATGATACAATGGATGCCACAAGTGGAGGAGGAAGTTTTGAGACTGATGTCAACTCAGATGCCCTCGCAACACTAACAGAATTATCCAACTCTGGAATGCAGCAGCTTTTAGAAGACTCTTCTCAGCGCAACTCTGAGCCCCACATGGATGATACTAGTCAGTCTCAGGGAAGTCAAATAAATTCTAGCTTTGGAGCAGGGTCAAGAAACATATCATTGGAACCTCAGGTGGACAGTGTTAATCAGAACAGTCAGGTCAACCATCTTAATCAATCATTTTCATCTCAACCTCATAATGTCAATATCGATTGTCAGCCTGACTTGACAGCCACAAATCAGGTGAACCATCTCCCAGAATCTTTCGCTGTTCCCACACAGAATGTCTCTCTTCTCCAAAATCcttttcaacatttgaaaagtACTGCCAATGAAACCCACCCATTTACTTGCTCTGCAAGTGGTGACCTAAGCCCATTACCAGAGCTTTCTGATCAGTTGCAATCGATGGAGGCCCTTCATCCTCACTACACTCATGGTGGTGAATCTACAAGGCCAAGTTCTGTTGGAAGTACTGATGAATCTCTTCCAAAATTAGCAGATGTTTTGGCAATTAGCATTCAGGGAGGTTTGTAA
Protein Sequence: MGTLYLGVNKFLTALSDVINMMMDLGILSSHVFSYSVAQDLSNMVVDERHLESFSKFLKEAKDMLDHLSDQISHRNKEGFEDIVLGFQGRSSIVTDPIDVNASCNSEGKSHENSFTSTCGTATYAQMKTASALDVGFSSASQQRYGSMNDAGCEMSTGRFSPLNETQFNTASALSRNRHYAVPDNSSCYDVTASSVGHDNSLSSHSAAFNLPNHMVVNSHFQTNCESAFDGPANPMMHFTTCSQDTSLKQFSSTGESQNHDRQYVSHDKSQDFSSKPSCEFAQPNDTRDSQRFTSPQGHFSPPTESNCDTMYGSRCETTQDAHFSCDTSYETSNHSAHGMHSSGVPFQTSTEQSLNTHYSHPSLSAESNFGVQPKNQHASAFSMVTAINSAQFASCQSSSEKSQFASTENGQSKMHYSQRNTMCEPFPQMNGNNSFVEMSNDSHNTHVTARGVSEMKYPHVSSFKWGVLSETEDSFDPSSPVQTSNQTQDSTEFGDLQIAFPNQVGKDGSNLKRDETSKDTLATSGENSFAFLLGTRDPMSCDDMSKKKLDIFEGVKQEGGKWKCPVCAKLFIARVNFERHFKVQHLGEKAFPCNLCDKGFSSKIRLDAHLMRQHNLNCESANPCTVCGKLFNTKTALKTHSLTHVDESEKPFACNICNKRFSQKVVLDTHLLRHGGPSSYKFQCKMCSKSFPTKPKLKFHWRKHETAQFHCKECPKEFPNEGLLRAHEATHVAFSERPFQCSECPKTFTTKHKLQSHFETHSQTNQYSCEECSSVFKCRSTLVAHTRKRHQKSERLLPDSTPDCSDPSTTFPPSQLEPPQTLPADTTFKCSICLKEFRRKKNLREHEINCHQEVPRLACDHCPKRFKSKTKLKIHLATHTEEPSLACRTCGKRFYRSDLLRTHEATHTGNKPFSCDVCARRFATQSMLRSHQVIHQPPPETSAEVPCPTCGKKFKNKRTLALHVKCHADSLEFKCGTCGKQFARRVHYDGHMRTHSADRPYSCTVCNRTFRERKHRADHMRRLHPNEILGGGELTLQKLIDSISADDTMDATSGGGSFETDVNSDALATLTELSNSGMQQLLEDSSQRNSEPHMDDTSQSQGSQINSSFGAGSRNISLEPQVDSVNQNSQVNHLNQSFSSQPHNVNIDCQPDLTATNQVNHLPESFAVPTQNVSLLQNPFQHLKSTANETHPFTCSASGDLSPLPELSDQLQSMEALHPHYTHGGESTRPSSVGSTDESLPKLADVLAISIQGGL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733364;
90% Identity: -
80% Identity: -