Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML762977.1:3083813-3103808[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 6.3e-06 0.00034 20.8 3.2 1 23 47 69 47 69 0.98

2 24 0.0043 0.23 11.9 0.1 2 22 75 95 74 97 0.89

3 24 0.0026 0.14 12.6 0.4 1 23 143 165 143 165 0.96

4 24 2.1e-06 0.00011 22.3 0.6 1 23 174 196 174 196 0.98

5 24 0.64 35 5.0 0.5 1 23 200 222 200 222 0.93

6 24 3e-06 0.00016 21.8 1.2 1 23 228 251 228 251 0.97

7 24 0.0057 0.31 11.5 0.3 2 23 258 279 257 279 0.97

8 24 0.013 0.71 10.3 0.5 2 22 283 303 282 303 0.93

9 24 0.091 4.9 7.7 0.7 2 23 305 327 304 327 0.95

10 24 0.045 2.5 8.6 0.3 6 23 434 451 433 451 0.96

11 24 0.00071 0.039 14.3 4.6 3 23 459 479 457 479 0.97

12 24 0.044 2.4 8.7 0.4 2 19 483 500 483 500 0.97

13 24 0.0002 0.011 16.0 3.3 3 23 508 528 507 528 0.97

14 24 3.1e-05 0.0017 18.6 0.9 1 23 540 562 540 562 0.97

15 24 0.008 0.43 11.0 0.2 1 23 568 590 568 590 0.98

16 24 3.2e-05 0.0017 18.5 0.5 1 23 596 618 596 618 0.98

17 24 0.006 0.33 11.4 0.3 1 19 626 644 626 647 0.95

18 24 0.00024 0.013 15.8 2.9 2 23 682 703 681 703 0.98

19 24 0.0043 0.23 11.9 1.1 2 21 712 731 711 732 0.93

20 24 0.00062 0.034 14.5 4.5 1 23 763 785 763 785 0.99

21 24 0.004 0.22 11.9 0.5 1 19 793 811 793 814 0.94

22 24 0.032 1.7 9.1 0.0 3 21 853 871 853 872 0.94

23 24 0.016 0.84 10.1 2.1 1 23 893 915 893 915 0.95

24 24 0.034 1.8 9.0 2.8 1 20 921 940 921 942 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	6.3e-06	0.00034	20.8	3.2	1	23	47	69	47	69	0.98
2	24	0.0043	0.23	11.9	0.1	2	22	75	95	74	97	0.89
3	24	0.0026	0.14	12.6	0.4	1	23	143	165	143	165	0.96
4	24	2.1e-06	0.00011	22.3	0.6	1	23	174	196	174	196	0.98
5	24	0.64	35	5.0	0.5	1	23	200	222	200	222	0.93
6	24	3e-06	0.00016	21.8	1.2	1	23	228	251	228	251	0.97
7	24	0.0057	0.31	11.5	0.3	2	23	258	279	257	279	0.97
8	24	0.013	0.71	10.3	0.5	2	22	283	303	282	303	0.93
9	24	0.091	4.9	7.7	0.7	2	23	305	327	304	327	0.95
10	24	0.045	2.5	8.6	0.3	6	23	434	451	433	451	0.96
11	24	0.00071	0.039	14.3	4.6	3	23	459	479	457	479	0.97
12	24	0.044	2.4	8.7	0.4	2	19	483	500	483	500	0.97
13	24	0.0002	0.011	16.0	3.3	3	23	508	528	507	528	0.97
14	24	3.1e-05	0.0017	18.6	0.9	1	23	540	562	540	562	0.97
15	24	0.008	0.43	11.0	0.2	1	23	568	590	568	590	0.98
16	24	3.2e-05	0.0017	18.5	0.5	1	23	596	618	596	618	0.98
17	24	0.006	0.33	11.4	0.3	1	19	626	644	626	647	0.95
18	24	0.00024	0.013	15.8	2.9	2	23	682	703	681	703	0.98
19	24	0.0043	0.23	11.9	1.1	2	21	712	731	711	732	0.93
20	24	0.00062	0.034	14.5	4.5	1	23	763	785	763	785	0.99
21	24	0.004	0.22	11.9	0.5	1	19	793	811	793	814	0.94
22	24	0.032	1.7	9.1	0.0	3	21	853	871	853	872	0.94
23	24	0.016	0.84	10.1	2.1	1	23	893	915	893	915	0.95
24	24	0.034	1.8	9.0	2.8	1	20	921	940	921	942	0.94

Sequence Information

Coding Sequence: ATGAATAATGAGCTTCATCTCTCTGAGGATTCTGACGACGGCTCATCACCTTCAACCCCAGAAGATGGTACAATCAAAGGAAACTCAGAAGAAGAAAAGTCTACCTGTGCGAATGACTCAAAGGGATCTACATCTAAGTTCACATGTGATGTATGTGATAAGGCCTATAGGCATAAATCTGATATGCTCCGTCATCGACGTAGTCATGTTGaatcagttgtaaaatgctCTCAATGTCCAGCATCTTTTCCTACTGAGATGTCTCTAAAGAAGCATGCTGCAGCAAAGCATAGCAATGAAAGTCGTGACTTTGGTGACCATTTTCTTGCACAACTAGTTCTTCCAGGTTCTAATGCCGACAGTGAAGATCCGCCTTCACCTGAGCCTAAATATGAGAATAAagcagctgcagatgctgccAAAGGATATCCATGCAGTCCATGTGGGTTGAGATTCAGAGACAAAAGAGCTCTTGACCGTCACAACAAGATGCACACTGATGTTGAGAAACTCAAAGGGTACCCCTGTAACCAGTGTGAGGAGCGTTTTAGAGACAAAAGAGCACTGGAACGCCATATCAGACAGCACTCTAAACCTTATATGTGCATTCAATGTAGGGCGCGATTTTCAACTGATGAATTATTGAAAGAACATGAAAGCAagcatgaagatttaaaacaGTACAATTGTGAAAAATGCAAACAGGTTTATTCAAGTGCTCGTAATTTAAAGCGCCATATGCAGATCAACCACTCAAGTGTGAAACAGTTAAGCTGCCCAGTGTGCAGAAAAGACTTCCTTTCTGATCAGGACCTAACCGCTCATATGAAAAAACATGAAGAGACTACCTGTAATCAATGCACTGCCGTTTTTGATACAGAAGAAGAACTGAGAAGTCATGTCTGCACCATGCAATGTCACTTTTGCATGGAGTTGTTCGCATCCAAGACAGCTTTGGAAGATCATATGCTTAATCTTCACGCAGCAGAACTAGAGGAAGAGAGGAGTGATGATTATCGGATGGATGGAGATGATGAttttgaagatgatgatgatgacgatgatgatgatgatgaggatgatgatgatgacagtAATGATATGAGGTTTGAACCTAAATTGTCGATTGTAGAGGACAGTGTTGATAATATGGAAatcgctgatgatgatgataatgatgaagatgaagatatGGTGAGAACACCAGAGGATGTTAACTCCGAAGAAGGATCTGATATGGAGAATGGAATTAATGACTTCGATACTAGCCCTCAAGATGACACTCCTTTATGTATTGCATGTGGGACATCATTTCATACTACAAAAGACTTAAAAATCCACATGGTTGAACATGCAAGAAAACGTTCTTTTGGTTGCCTTAAATGCAATAAGAACTTTACAACGATGACAAACTTGAGACGCCACTTACAACATCATGAGAAGAATACTTGCAAAAGATGTGGTCTATTTTTCATTCATGCCAAGTCTTTGGAAATACATGATTGTGGATACACACCTCATTGTAATATTTGCAACAGGCCATTCAACTCAAAGCGTGAATACCGTCTTCATATGTCTACCCATGGAATAATTGAAGAAGAAGACAAGAATGAGTGCTATAAATGTGCTGACTGTGGCAAAACATTTGCCAAATTCATGAATTTCCGGGCTCACCGGGCTAATCATACTGGCGAGAAGCCTTTTGTGTGTCGAGATTGTAGTGAAGGATTTTTATCTGCAACTGCTTTAAGAATTCATCGCCGCTCTCACACAGGGAAAACTTACTTTAGTTGTCCATTATGTGATGCAACTTTTGTCTATGAGTTCAAGCTAAGGCAGCACATGTTGACTCATAAAACTGATGAGGAAATGCCATTTCATTGCCCCCATTGTCAACAAGGGTTTGTGGCAAAATCTGGTCTCCTTCGCCATGAAGTTGTTTGTCAGTCACAATCATCTGAAGTaaataaagaagaaagtgcTGAAGCTATGCGTAGGCAAAGAATGTACAACAGAAGCAAAGTTGGCAAAAACCCTAACAAGAAGTGTCATGAATGTGGAGAAACTTTCTTACGATATGATCAATTCCTTTTGCACATGAGAACTCACAATGACAAGGCAGAACTCCCATTACAGTGCTCATACTGTCCTAAAGGCTTTGTTCATGAATATAATCGCAAACAACACGAGAGGTTTTGCTCAAAACGCTCTGCTGAAGAAAGGGAAGAACGTCTCGAGAAGGAAAGGGACTACAACTTGTACAAAACCTTCAAAGGCCAAAAAGTATTCAAATGTCCTGAATGTAAGCAAATGTTCCGATATAGGCACAAATTTGTTTTGCATCAAGAAACCCATAAAAGTGATGGAGAAAAGAAGTATCATTGCTCTCTTTGTGGTGGTGGATTTGTCTCTAGATCGGGGTTGAAGAGGCATGGAATGCATTGTGAAAAGCGATCCCAACTAGAAAGGGGACAGCGGcaagagaagaagaagcaaaaAGCAAGCATGCTTAAACACTCCAGAAGTAGAtcgaaaggagaagaaaaaagtCTGTGGTGTGCTGACTGTGGTGGAGGGTTTACAGACAAGCAAGAACTTGCGAACCACAGACTTTCATGTGTCAGAGCTATGATTTCAGGAAAGAAAAAAGTCGTGACTAAAACTGCTCTGAAAGATTTTAAATGTCCAATTTGTACCAGAGTTTTCCATTTTGCACACATTCTGAAATTACACATGGATGCCCATAATGGAATATTCCCATACCAGTGTAAGATGTGCTCAAGGGGATTCACCCTGAAATCAAGTTACCTTCTGCACAAATGCCTCAAGGGGTCAGAGTCTGGTGAAAGAGATGGTGAAGGAACCTCTTTGGATTATATGGACGCAGAAATGCAAATGGACCCTGCTATTAAACAAGAACCTTTAGATGAGGAAGCTTAA
Protein Sequence: MNNELHLSEDSDDGSSPSTPEDGTIKGNSEEEKSTCANDSKGSTSKFTCDVCDKAYRHKSDMLRHRRSHVESVVKCSQCPASFPTEMSLKKHAAAKHSNESRDFGDHFLAQLVLPGSNADSEDPPSPEPKYENKAAADAAKGYPCSPCGLRFRDKRALDRHNKMHTDVEKLKGYPCNQCEERFRDKRALERHIRQHSKPYMCIQCRARFSTDELLKEHESKHEDLKQYNCEKCKQVYSSARNLKRHMQINHSSVKQLSCPVCRKDFLSDQDLTAHMKKHEETTCNQCTAVFDTEEELRSHVCTMQCHFCMELFASKTALEDHMLNLHAAELEEERSDDYRMDGDDDFEDDDDDDDDDDEDDDDDSNDMRFEPKLSIVEDSVDNMEIADDDDNDEDEDMVRTPEDVNSEEGSDMENGINDFDTSPQDDTPLCIACGTSFHTTKDLKIHMVEHARKRSFGCLKCNKNFTTMTNLRRHLQHHEKNTCKRCGLFFIHAKSLEIHDCGYTPHCNICNRPFNSKREYRLHMSTHGIIEEEDKNECYKCADCGKTFAKFMNFRAHRANHTGEKPFVCRDCSEGFLSATALRIHRRSHTGKTYFSCPLCDATFVYEFKLRQHMLTHKTDEEMPFHCPHCQQGFVAKSGLLRHEVVCQSQSSEVNKEESAEAMRRQRMYNRSKVGKNPNKKCHECGETFLRYDQFLLHMRTHNDKAELPLQCSYCPKGFVHEYNRKQHERFCSKRSAEEREERLEKERDYNLYKTFKGQKVFKCPECKQMFRYRHKFVLHQETHKSDGEKKYHCSLCGGGFVSRSGLKRHGMHCEKRSQLERGQRQEKKKQKASMLKHSRSRSKGEEKSLWCADCGGGFTDKQELANHRLSCVRAMISGKKKVVTKTALKDFKCPICTRVFHFAHILKLHMDAHNGIFPYQCKMCSRGFTLKSSYLLHKCLKGSESGERDGEGTSLDYMDAEMQMDPAIKQEPLDEEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732023;
90% Identity: iTF_00732023;
80% Identity: -