Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000394.1:2476751-2480013[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 7.5e-06 0.00065 20.8 3.2 1 23 47 69 47 69 0.98

2 24 0.002 0.17 13.1 0.1 2 22 75 95 74 97 0.89

3 24 0.00043 0.037 15.3 0.7 1 23 143 165 143 165 0.98

4 24 3.1e-06 0.00027 22.0 0.4 1 23 174 196 174 196 0.98

5 24 0.52 45 5.5 0.4 1 23 200 222 200 222 0.94

6 24 1.4e-05 0.0012 20.0 2.8 1 23 228 250 228 251 0.95

7 24 0.00042 0.036 15.3 0.2 2 23 258 279 257 279 0.97

8 24 0.016 1.4 10.3 0.5 2 22 283 303 282 303 0.93

9 24 0.11 9.4 7.7 0.7 2 23 305 327 304 327 0.95

10 24 0.055 4.7 8.6 0.3 6 23 433 450 432 450 0.96

11 24 0.00086 0.074 14.3 4.6 3 23 458 478 456 478 0.97

12 24 0.052 4.5 8.7 0.4 2 19 482 499 482 499 0.97

13 24 0.00025 0.021 16.0 3.3 3 23 507 527 506 527 0.97

14 24 3.7e-05 0.0032 18.6 0.9 1 23 539 561 539 561 0.97

15 24 0.0012 0.1 13.9 0.1 1 23 567 589 567 589 0.98

16 24 0.00016 0.014 16.6 1.0 1 23 595 617 595 617 0.98

17 24 0.0074 0.64 11.4 0.1 1 19 625 643 625 646 0.95

18 24 0.00029 0.025 15.8 2.9 2 23 681 702 680 702 0.98

19 24 0.0052 0.44 11.9 1.1 2 21 711 730 710 731 0.93

20 24 0.0039 0.33 12.2 5.8 1 23 762 784 762 784 0.99

21 24 0.0042 0.36 12.2 0.5 1 19 792 810 792 813 0.94

22 24 0.038 3.2 9.1 0.0 3 21 852 870 852 871 0.94

23 24 0.019 1.6 10.1 2.1 1 23 892 914 892 914 0.95

24 24 0.04 3.5 9.0 2.8 1 20 920 939 920 941 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	7.5e-06	0.00065	20.8	3.2	1	23	47	69	47	69	0.98
2	24	0.002	0.17	13.1	0.1	2	22	75	95	74	97	0.89
3	24	0.00043	0.037	15.3	0.7	1	23	143	165	143	165	0.98
4	24	3.1e-06	0.00027	22.0	0.4	1	23	174	196	174	196	0.98
5	24	0.52	45	5.5	0.4	1	23	200	222	200	222	0.94
6	24	1.4e-05	0.0012	20.0	2.8	1	23	228	250	228	251	0.95
7	24	0.00042	0.036	15.3	0.2	2	23	258	279	257	279	0.97
8	24	0.016	1.4	10.3	0.5	2	22	283	303	282	303	0.93
9	24	0.11	9.4	7.7	0.7	2	23	305	327	304	327	0.95
10	24	0.055	4.7	8.6	0.3	6	23	433	450	432	450	0.96
11	24	0.00086	0.074	14.3	4.6	3	23	458	478	456	478	0.97
12	24	0.052	4.5	8.7	0.4	2	19	482	499	482	499	0.97
13	24	0.00025	0.021	16.0	3.3	3	23	507	527	506	527	0.97
14	24	3.7e-05	0.0032	18.6	0.9	1	23	539	561	539	561	0.97
15	24	0.0012	0.1	13.9	0.1	1	23	567	589	567	589	0.98
16	24	0.00016	0.014	16.6	1.0	1	23	595	617	595	617	0.98
17	24	0.0074	0.64	11.4	0.1	1	19	625	643	625	646	0.95
18	24	0.00029	0.025	15.8	2.9	2	23	681	702	680	702	0.98
19	24	0.0052	0.44	11.9	1.1	2	21	711	730	710	731	0.93
20	24	0.0039	0.33	12.2	5.8	1	23	762	784	762	784	0.99
21	24	0.0042	0.36	12.2	0.5	1	19	792	810	792	813	0.94
22	24	0.038	3.2	9.1	0.0	3	21	852	870	852	871	0.94
23	24	0.019	1.6	10.1	2.1	1	23	892	914	892	914	0.95
24	24	0.04	3.5	9.0	2.8	1	20	920	939	920	941	0.94

Sequence Information

Coding Sequence: ATGAATAATGAGCTACATCTATCTGAGGATTCCGATGACGACTCATCGCCATCTACTCCAGAGGATGCTACGATCAAAGGGAACTCGGAAGAAGAAAAGTCAGCGTCTGCAAATGACTCAAAAGCCTCTAGTGCCAAATTCACATGTGATGTGTGTGATAAGGCCTACCGGCACAAGTCTGATATGCTTCGACACCGCCGCAGTCATGTTGAATCGGTAGTGAAATGCCCCCAATGTCCTGCTTCTTTTCCAACGGAGATGTCTTTGAAAAAGCATGCTGCAGCAAAGCACAGCAATGAAAGTCGAGATTTTGGTGACCATTTTCTAGCTCAACTAATAATTCCAGGTTCAAATTTAGAAGGTGAAGATCCTCCATCACCTGAAGCTAAGTACGAGAACAAAACATCTGCCGAAGCAGCAAAAGGTTACCCATGCACTTCATGTGGATTGAGATTCAGAGACAGGAGAGCTCTTGATCGTCACAATAAAATGCACACAGACGTAGAGAAGCTTAAAGGATATCCTTGTGACCAGTGTGACGAGCGCTTCAGAGACAAAAGGGCCCTGGAAAGGCATGTGAGACAGCACTCCAAGCCGTATGTTTGCATCCAGTGCAGAGCACGATTTTCAACCGATGAATTATTGAAAGAACACGAAAGCAAGCATGGAGACCTGAAGCAATTCAACTGTGAAAAATGCAAACAGGTTTATTCTAGTGCTCGGAATTTAAAACGACATATGCAAGCCCACCACTCAAGTGTGAAGCAGTTGAGCTGCCCAGTGTGCCGAAAAGATTTCCCTGCTGAAAAGGATCTAACTATTCACATGAAGAAACATGAAGAGACCACCTGTAATCAATGTACTGCTGTTTTCGACACAGAGGAAGAATTGAGAAGTCATGTGTGCACCATGCAATGTCATTTTTGTATGGAACTGTTTGCATCCAAAACAGCATTAGAAGATCATATGCTGAATCTTCATGCAACTGAACTAGAAGAAGAGAGGAGTGATGATTATCGTAtggatgaagatgatgatgacgattttgaagatgatgatgaagacaatgacaatgatgaagatgatgatagTAATGATATGAGGTTTGAACCAAAATTATCTATTGTTGAAGATAGTGTTGATAATGTTGAAAATCCGGAGGAAGATGATAATGATGAAGATGAGGATATGGTTAGAACACCTGAGGATGTCAATTCTGATGATGAGTCTGATATGGAGAATGGAATGAATGAATTTGACACAAGCCCTCAAGATGACACTCCTTTGTGTATTGCCTGCGGAACATCATTTCATACCACAAAAGACTTAAAAATTCATATGGTTGAACATGCAAGAAAACGCTCTTTTGGCTGCCTGAAATGTAATAAAAACTTCACAACCATGACAAACCTGCGGCGCCACTTACAACATCACGAGAAAAACACTTGCAAAAGATGTGGCCTATTTTTCATTCATGCTAAATCTTTAGAAATTCATGACTGTGGGTACACTCCACATTGTAACATTTGCAACCGGCCTTTCAATTCAAAGCGTGAATACCGCTTACACATGTCTACCCATGGTATCATTGAAGAGGAAGACAAGAATGAGTGCTATAAATGTGCTGACTGTGGCAAAACATTTGCCAAGTTCATGAATTTCCGAGCTCACCGGGCCAATCATACTGGAGAGAAACCCTTTGTGTGTCGTGACTGCGGAGAAGGATTTTTATCTGCCACTGCCTTAAGAATTCATCGCCGTTCTCACACAGGGAAAACATACTTTAGCTGTCAATTATGTGATGCAACTTTTGTCTATGAGTTCAAGCTCAGACAACACATGTTAACTCATAAAACTGATGAAGAAATGCCTTTCCACTGTCCATATTGTCAACAAGGATTTGTTGCTAAATCAGGTCTCCTTCGCCATGAAGTAGTCTGTCAGTCACAGTCATCTGAAGTCAATAAAGAAGAAAGTGCAGAAGCTATGCGAAGGCAAAGAATGTACAACAGGAGCAAAGTTGGCAAAAACCCTAACAAAAAGTGTCATGAATGTGGAGAAACTTTCCTTAGGTATGATCAATTTCTTCTGCACATGAGAACCCACAATGACAAGGCAGAACTTCCATTGCAGTGCTCATATTGTCCCAAGGGCTTTGTTCATGAATATAATCGTAAACAGCATGAAAGGTTTTGTTCAAAACGCTCTGCTGAGGAAAGGGAAGAACGTTTGGAGAAGGAAAGAGACTACAATCTGTACAAAACTTTTAAAGGCCAAAAGGTATTCAAATGTACAGAATGTAAGCAAATGTTCCGATACCGGCACAAGTTTGTATTGCATCAGGAAACCCATAAAAGTGATGGAGAAAAGAAATACCATTGCACTCTCTGTGGTGGTGGGTTTGTCTCTAGGTCAGGATTGAAAAGACATGGAATGCATTGCGAAAAACGATCCCAACTGGAAAGAGGGCAGAGAcaagagaagaaaaaacagaaggCAAGCATGCTTCAACACTCTAAAAGTAGATCAAAAGGTGAAGAAAAGAGTTTGTGGTGTGCAGATTGTGGAGGAGGGTTTTCAGACAAGCAAGAACTTGCCAACCACAGGCTTTCATGTGTCAGAGCAATGATTTCAGGGAAGAAAAAAGTTGTTACTAAAACTGCCTTGAAGGACTTTAAATGTCCAATTTGTACCAGAGTTTTCCATTTTGCACACATTCTGAAATTGCACATGGATGCACACAATGGAATATTCCCATACCAGTGTAAGATGTGCTCAAGAGGATTTACCCTTAAGTCAAGTTACCTTTTGCACAAATGCCTTAAAGGTTCAGAGTCTGGTGAACAAGAAGGTGAGGGCATCTCATTGGATGGTATAGATGCAGAAATGCAAATGGACTCAGCTATTAAACAAGAACCCTTAGATGAGGAAGCTTAA
Protein Sequence: MNNELHLSEDSDDDSSPSTPEDATIKGNSEEEKSASANDSKASSAKFTCDVCDKAYRHKSDMLRHRRSHVESVVKCPQCPASFPTEMSLKKHAAAKHSNESRDFGDHFLAQLIIPGSNLEGEDPPSPEAKYENKTSAEAAKGYPCTSCGLRFRDRRALDRHNKMHTDVEKLKGYPCDQCDERFRDKRALERHVRQHSKPYVCIQCRARFSTDELLKEHESKHGDLKQFNCEKCKQVYSSARNLKRHMQAHHSSVKQLSCPVCRKDFPAEKDLTIHMKKHEETTCNQCTAVFDTEEELRSHVCTMQCHFCMELFASKTALEDHMLNLHATELEEERSDDYRMDEDDDDDFEDDDEDNDNDEDDDSNDMRFEPKLSIVEDSVDNVENPEEDDNDEDEDMVRTPEDVNSDDESDMENGMNEFDTSPQDDTPLCIACGTSFHTTKDLKIHMVEHARKRSFGCLKCNKNFTTMTNLRRHLQHHEKNTCKRCGLFFIHAKSLEIHDCGYTPHCNICNRPFNSKREYRLHMSTHGIIEEEDKNECYKCADCGKTFAKFMNFRAHRANHTGEKPFVCRDCGEGFLSATALRIHRRSHTGKTYFSCQLCDATFVYEFKLRQHMLTHKTDEEMPFHCPYCQQGFVAKSGLLRHEVVCQSQSSEVNKEESAEAMRRQRMYNRSKVGKNPNKKCHECGETFLRYDQFLLHMRTHNDKAELPLQCSYCPKGFVHEYNRKQHERFCSKRSAEEREERLEKERDYNLYKTFKGQKVFKCTECKQMFRYRHKFVLHQETHKSDGEKKYHCTLCGGGFVSRSGLKRHGMHCEKRSQLERGQRQEKKKQKASMLQHSKSRSKGEEKSLWCADCGGGFSDKQELANHRLSCVRAMISGKKKVVTKTALKDFKCPICTRVFHFAHILKLHMDAHNGIFPYQCKMCSRGFTLKSSYLLHKCLKGSESGEQEGEGISLDGIDAEMQMDSAIKQEPLDEEA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733350;
90% Identity: iTF_00733350;
80% Identity: -