Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00036 0.23 11.4 1.8 4 41 30 62 27 63 0.90

2 7 0.056 35 4.4 0.0 11 25 81 93 73 95 0.78

3 7 0.014 8.8 6.3 3.0 4 43 98 131 96 132 0.89

4 7 0.012 7.3 6.6 0.0 6 27 147 166 145 170 0.87

5 7 0.071 45 4.1 0.3 2 22 167 185 166 186 0.90

6 7 0.036 22 5.0 0.6 15 27 216 228 198 233 0.77

7 7 0.0012 0.78 9.7 4.6 15 44 240 266 229 266 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00036	0.23	11.4	1.8	4	41	30	62	27	63	0.90
2	7	0.056	35	4.4	0.0	11	25	81	93	73	95	0.78
3	7	0.014	8.8	6.3	3.0	4	43	98	131	96	132	0.89
4	7	0.012	7.3	6.6	0.0	6	27	147	166	145	170	0.87
5	7	0.071	45	4.1	0.3	2	22	167	185	166	186	0.90
6	7	0.036	22	5.0	0.6	15	27	216	228	198	233	0.77
7	7	0.0012	0.78	9.7	4.6	15	44	240	266	229	266	0.86

Coding Sequence: CTGCGGTCGGAGAACATTTTCGTGCCCGATGCCCAGGTTCCTGGCACCTATTTCTGCACAGTGTGCTCGAAGGCCGTCCGGAACAAGTGGCACCACATGCAAGTACATTTCCCCGGAGTTCATAAGTGCACCATTTGTGAAGCAGTGTATACCCGTGTTGATAAGCTGAAAGCCCATCTTCgatCGAGCGATACATTTGCAGGGACTGAAATATCTCATTTAGATTTCTATGAGAAACTACCGTTTGGTCAGGCTAAGTGTAAACTGTGCGGCCGAATAGTTTTGCACATGAAAAGCCACTTCAAGACTCATAAGCCTGATAAACGGCAATGTCCTATTTGCCGGTTGACAATGCGCTCAGACAATATTAAACGCCACCTCAGAGACAGACATGGCGTTGCTCACTCATCATCAACCAACGAATTATCCCACAAACTATTTTTTGAGAGACTTCCCAATGGATTGATAATGTGCAAGATCTGTGGCAGGGCTGTCTCGCACATGAAGAATCATTTTACAACCCATTCAAATGAAAGAGCTCAGTGCCCAGTCTGTTTTGTGTATCGTTCTAGGCCAGACAACTTAAAGCGGTCTAAAGTGTGGCACATGCGGCTGACCTTTGAGCGGATCCAGGGAGTGGCCAACAACTTGCACCGCTGCCGACTGTGCGGCAAGGTGGTGACCCACGTCCGAAACCACTACCACGTGCACTTCCCCGGCCGCTTCGAGTGTCCCCTGTGCCACGCGACCTACACGCGCAGCGACAACCTGCGCACGCACTGCCGCTTCAAGCACCCGCTCTTCAACCCCGACCTCAACAAGttcctcgcgcgcccgcccaccgggTCCCTGCCGTCTCCGTCCCCCTCGCCGGGTCAGTCCGCGGGAGCGCAGGACCTCGCGACGACGtcgaggggcggaggcgggggtggttctgggggcggcgggggcggtgggggagggagcggccggtccagcagcagcctgcgcgACTTGGAGCTCAAGCACTTCGGGGACATGATGGGGGAGCGCGACAGGGATGGAGAGGACGCCAGCGACAAGTCCTCC
Protein Sequence: LRSENIFVPDAQVPGTYFCTVCSKAVRNKWHHMQVHFPGVHKCTICEAVYTRVDKLKAHLRSSDTFAGTEISHLDFYEKLPFGQAKCKLCGRIVLHMKSHFKTHKPDKRQCPICRLTMRSDNIKRHLRDRHGVAHSSSTNELSHKLFFERLPNGLIMCKICGRAVSHMKNHFTTHSNERAQCPVCFVYRSRPDNLKRSKVWHMRLTFERIQGVANNLHRCRLCGKVVTHVRNHYHVHFPGRFECPLCHATYTRSDNLRTHCRFKHPLFNPDLNKFLARPPTGSLPSPSPSPGQSAGAQDLATTSRGGGGGGSGGGGGGGGGSGRSSSSLRDLELKHFGDMMGERDRDGEDASDKSS

Sequence clustering based on sequence similarity using MMseqs2