Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0011 0.71 9.8 0.8 17 41 10 31 3 33 0.80

2 10 0.004 2.5 8.1 1.2 18 38 39 54 35 59 0.74

3 10 0.018 11 6.0 1.9 17 40 64 84 54 87 0.80

4 10 0.018 12 5.9 3.0 17 38 92 114 82 114 0.82

5 10 0.079 50 3.9 0.1 19 41 122 141 119 143 0.87

6 10 0.018 11 6.0 2.8 17 39 148 167 139 171 0.81

7 10 0.0014 0.91 9.5 0.9 15 41 174 197 168 202 0.76

8 10 0.013 7.9 6.5 5.8 14 41 201 225 194 227 0.83

9 10 0.0068 4.3 7.3 2.0 18 40 233 252 227 255 0.87

10 10 0.019 12 5.9 0.8 17 29 260 272 253 277 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0011	0.71	9.8	0.8	17	41	10	31	3	33	0.80
2	10	0.004	2.5	8.1	1.2	18	38	39	54	35	59	0.74
3	10	0.018	11	6.0	1.9	17	40	64	84	54	87	0.80
4	10	0.018	12	5.9	3.0	17	38	92	114	82	114	0.82
5	10	0.079	50	3.9	0.1	19	41	122	141	119	143	0.87
6	10	0.018	11	6.0	2.8	17	39	148	167	139	171	0.81
7	10	0.0014	0.91	9.5	0.9	15	41	174	197	168	202	0.76
8	10	0.013	7.9	6.5	5.8	14	41	201	225	194	227	0.83
9	10	0.0068	4.3	7.3	2.0	18	40	233	252	227	255	0.87
10	10	0.019	12	5.9	0.8	17	29	260	272	253	277	0.84

Coding Sequence: ATgagaacccacactggagagaaaccattcgagtgtacaatctgcaacaagaaatttgcactAAGCGCCACCTTGAGCAAACATCTCCGGACTCACACTGGAGAGAGGCCTTTTGAGTGTAAAATCTGCAAGAAGAAATTTGCAGGCTCACTGAGTCTtcacctccgaacccacacaggtgaaaagccCTTCGACTGTACAATCTGCGAGAAGAAATTTTCACAAGAGATCAACTTGCGCGTACATATCCGGAAGCATACAGGGGAGAGGCCCTACGAGTGTACTATATGCAAGAAGAAACTTGTTACAAAGGATGCCTTGACCGTACATCTCCGTAGGCACTCAGGAGAGAGGCCCTTTGATTGCTCAGTGTGTAACAAGGCATTTGCTTCTAATTCCGACTTGCGTGTTCacctgcgaacccacacaggggagaagcctTTTCAGTGTGacatctgcaacaagaaatttacaacAAGCAGCCATTTACGCGGGCACCTCCATATGCACACAGGAGAAACTCCCTTCGAGTGTGCaatctgcaacaaaaaatttgcAGAGAAACGTGGATTGAGCGGTCATCTCCGTACACACACAAGAGAGAGGCCCTACAAATGTACAGTCTGCAATAAGCAATGTTCATCAAAGAGCAATTTGGTCGTACATTTACGGACCCAtaccggagagaagccatatgagtgcacaatctgcaacaagaaatttggaCATAGCAACAGTCTGCGTCAACATCTCCGGGGCCACACAGGAGAAACCCCATATGAATGcacaatctgcaacaagaaatttaaagGAAAGCCATATAGGAGAGAAGAAATTTGA
Protein Sequence: MRTHTGEKPFECTICNKKFALSATLSKHLRTHTGERPFECKICKKKFAGSLSLHLRTHTGEKPFDCTICEKKFSQEINLRVHIRKHTGERPYECTICKKKLVTKDALTVHLRRHSGERPFDCSVCNKAFASNSDLRVHLRTHTGEKPFQCDICNKKFTTSSHLRGHLHMHTGETPFECAICNKKFAEKRGLSGHLRTHTRERPYKCTVCNKQCSSKSNLVVHLRTHTGEKPYECTICNKKFGHSNSLRQHLRGHTGETPYECTICNKKFKGKPYRREEI

Sequence clustering based on sequence similarity using MMseqs2