Focc012082.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- Lztr1
- Assembly
- None
- Location
- ML763034.1:557653-563335[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.7e-13 1.5e-10 41.1 0.2 2 108 396 530 395 532 0.85 2 4 0.9 1.7e+02 2.3 0.1 78 107 532 561 527 564 0.85 3 4 2.8e-18 5.2e-16 58.7 0.0 8 97 651 740 644 754 0.86 4 4 2.8 5.2e+02 0.7 0.0 76 98 753 775 750 784 0.83
Sequence Information
- Coding Sequence
- ATGAAGCAGGCCGGAAGCAGAACTCCCACTGCACCAGCGGAGCTTATAAATGAACAAGAAACTAGAAGAATAATTAATTTATTTCTCAGCAAAATGAATCCTACATCACGCTTTCCTAGAAGCACAGGAGAGGTTGATTTCTCCCAAGCATCAGCCGATTGTCTCACATTAGAGTTTGGACCTTTTGAAGTTGTACATAAGTGGAAGCGAATGCAAGAATGTAGTGAATTTGTTGGATCAAGGAGAAGCAAGCACACAATGGTTTCTTACAAGGATAATGTTTTTGTCTTTGGAGGTGACAATGGAAAAAGTATGTTGAATGATTTACTCGTATATGATTGTAAAGGTAAATCTTGGGGTCGTGTACCCCAAGGACAAAACCCTCCAGCACCTCGCTATCACCACTCAGCTGTGGTTTACGAAAACTCAATGTTTGTGTTCGGAGGCTACACTGGTGACATACATTCTAACTCAAATCTCACTAACAAAAATGATCTCTTTGAGTATAAATTTGGGGCTGCCATGTGGGTAGAGTGGAAATATGTTGGTCTTACTCCTGTCCCAAGATCAGCTCATGGCGCTGCTGTTTATGATGGCAATCTGTACATTTTTGCTGGATATGATGGTAATGCCCGTTTAAATGACATGTGGGCAATTTCATTGAAGGACGACTCTCCACACATATGGGAACAAATTGAACAAAGTGGTGACTGCCCTCCAACTTGCTGTAATTTTCCAGTAACAGTTGCCAAGGGCTGCATGTATGTTTTCAGTGGCCAAAGTGGAGCTAAAATCACCAATACTTTATTCCAGTTTGATTTCCGTACTAAAATGTGGTCCCGTATATCAACAGAGCATCTGCTCAGAGGTACTCCAGCTCCACCTGCTAGACGGTATGGACATACTATGGTAACTCATGATCAGCATTTGTATGTCTTTGGTGGAACTGCTGATAACACATTACCAAATGATGTGCATTGTTATGATGTAGATAGTGGAACATGGTCTGTAATTCAACCTTCTCCAGACTCAAAAGTTCCTGGAGGACGTCTTTTTCATGCTGCCACTGTTGTGGGTGATGCTATGTATGTTTTTGGTGGCACAGTAGATAATAATGTTCGCAGTGGAGAAATGTTCCGCTTCCAGTTTTCAACTTATCCTAAATGTACTCTCACAGAGGATTTTGGAAAACTACTTGAAACCCAACTTTTTAGTGATATCAATTTTATTGTTGGAGAAGAAGAAACACATATTCCTGCTCATGCTGCCATGGTTGCTGCTCGATCTCAGTACCTGCGAACCCACATTAGACAAGCTCAAGATATCAGGGATAAAATGCTGGAGAAGGAGTATGGTACAGCAGAGATTTTTAAAGATGTCCCATCTCTAGTAGTGAGGTTGCCAGATGTGAATTCTGAATCATTTCAATTAGTTCTGAATTACATATATACTGACCGTATTGATCCCTCAAAGAAAATTAAAGATCCTGCAAGCAACAGAGTTATCCTATTGATGTTGGATGTGTATCGTTTGGCTTGTAAGTTCATCATGCTACGACTGGAGCATATTTGTGTTCAGTACTTGGAATCCACTGTGAATCATACCAATGTTTTAGAAGCCCTATTATGTGCTCATGACCTAAAACTACCATTTATCAAGGAACTTTGTTTGAAATTGATTGTCAGAGAGACAAATTATACGCAGATTGTTATGAGCCCTGACTTTGAAACATTGGATCAACCACTAATGGTTGAAATAATAAGGAGAAAGCAATTACCCGTTCTCAAGAAAGCCCAGGAAACCCAACTCATGACTGAATTCAATGTGTATATAGACATACCTGAAACTATAAAAGATCCATGTGAATTTAATCCATGTAAAAGGACACCTGGACCTTTGCAAGGAACAACCTTGGAACAGGATATGGAACTATTTTTAAGCCATGTTGGTAATGACTTCTGTGACATAACTCTTGTTCTGGATGGTAATCACATCAGAGCCCACAAGGCAATCCTTGCAGCTCGTTGTGGATATTTTGAAGGGCTATTTCGATCATTCATGCCTGAAAATGGCCTAGTACAAattcaAATTGGTGAAATGATACCCTCTCTTCAGTCTTTTAACTCTCTGCTTCGATTTGTGTATTACGGAGATACTAATATGCCTCCTGAAGATTCCCTTTACCTCTTCAGCACCCCATACTTTTATAATTTCACAAATAACCGTCTTCAGGCATTCTGCAAGCAAAATTTAGAGTTAAACGTATCTTGTGACAatgttgtgcaaattttagaggCTGCTGATCGCATGCAAGCTATTGACATGAAAAAGTACTCTTTACGCCTCATTGTTAAATATTTCCCAAAGGTTATCAAAATGCCAAAAATTAGATCACTCAGTCGCGAGCTCTTGCTTGACATTATGGAGGCATTGGCAGATGAGATGTCTACTACCAAGTTGTGCTCTGACATATCAAATAACAGCCTTAACAGTGATGCCTAA
- Protein Sequence
- MKQAGSRTPTAPAELINEQETRRIINLFLSKMNPTSRFPRSTGEVDFSQASADCLTLEFGPFEVVHKWKRMQECSEFVGSRRSKHTMVSYKDNVFVFGGDNGKSMLNDLLVYDCKGKSWGRVPQGQNPPAPRYHHSAVVYENSMFVFGGYTGDIHSNSNLTNKNDLFEYKFGAAMWVEWKYVGLTPVPRSAHGAAVYDGNLYIFAGYDGNARLNDMWAISLKDDSPHIWEQIEQSGDCPPTCCNFPVTVAKGCMYVFSGQSGAKITNTLFQFDFRTKMWSRISTEHLLRGTPAPPARRYGHTMVTHDQHLYVFGGTADNTLPNDVHCYDVDSGTWSVIQPSPDSKVPGGRLFHAATVVGDAMYVFGGTVDNNVRSGEMFRFQFSTYPKCTLTEDFGKLLETQLFSDINFIVGEEETHIPAHAAMVAARSQYLRTHIRQAQDIRDKMLEKEYGTAEIFKDVPSLVVRLPDVNSESFQLVLNYIYTDRIDPSKKIKDPASNRVILLMLDVYRLACKFIMLRLEHICVQYLESTVNHTNVLEALLCAHDLKLPFIKELCLKLIVRETNYTQIVMSPDFETLDQPLMVEIIRRKQLPVLKKAQETQLMTEFNVYIDIPETIKDPCEFNPCKRTPGPLQGTTLEQDMELFLSHVGNDFCDITLVLDGNHIRAHKAILAARCGYFEGLFRSFMPENGLVQIQIGEMIPSLQSFNSLLRFVYYGDTNMPPEDSLYLFSTPYFYNFTNNRLQAFCKQNLELNVSCDNVVQILEAADRMQAIDMKKYSLRLIVKYFPKVIKMPKIRSLSRELLLDIMEALADEMSTTKLCSDISNNSLNSDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731836; iTF_01435079;
- 90% Identity
- iTF_00731836;
- 80% Identity
- -