Focc008295.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- ML762987.1:1602953-1604118[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-70 2.6e-66 223.8 15.7 103 300 1 194 1 194 0.92 2 2 0.0043 71 2.4 0.5 120 165 192 237 191 240 0.88
Sequence Information
- Coding Sequence
- ATGATCCAGAACGCGCAGCTGGACAATGAGAAGGCTAGCTACACGTATCAGGTGGAGCTGCTCAAGGATAAGGTGGAAGACTTGGAGGTGGCATATGCCCAGCTGCAGAGGGAAAATAGGGAAAAATGTCGAGAGGCTGATCAGCTCAAACGTCTCTCTCAGCGCCTTAAAGAAGATCTGGATATGTGTCGAGCAGCTTTAGAAGAACGGGATAGACTTATTCAGGAACAAGGTTTGGTTATTGTTGGAGATGAAGGGGACCTAGATGGCTGTGAAGATGGAGAAAAGCGAGCTCCTAGAAAAGCTCTTGTTTCAGTTGAATCAGCAGAAATGTTACAGAAGGCAGGGGAAGGTTCATTAGATGTACGACTGCGAAAGTTGGCTGAAGAACACAACGAACTCCTGGATCAGATTCGACATCTGAAACTTGAATTAGAGGAGGAGCGCAGTAGACATCGAAATGGGCCTCGTACTCTCAATGGTCCTGCTGACTCTGATATGGAGGACCTTCAAAGAGAAGCTCAAAAATTGCTAGGTGATTATAAATTCAAACTGCAAAAGGCAGAACAAGATGTTTCAACATTGCAGGCCAATGTTGCAAGACTGGAAAGCCAAGTTATTCGTTACAAATCGGCAGCTGAAACAGCAGAAAAGGTAGAGGATGAATTAAAAGTGGAAAAGAGGAAACTTCAACGAGAGGTGAGTTTCTGTCTAGAATTATTTTGTTACTTTGGAATGCCTATTTATTGA
- Protein Sequence
- MIQNAQLDNEKASYTYQVELLKDKVEDLEVAYAQLQRENREKCREADQLKRLSQRLKEDLDMCRAALEERDRLIQEQGLVIVGDEGDLDGCEDGEKRAPRKALVSVESAEMLQKAGEGSLDVRLRKLAEEHNELLDQIRHLKLELEEERSRHRNGPRTLNGPADSDMEDLQREAQKLLGDYKFKLQKAEQDVSTLQANVARLESQVIRYKSAAETAEKVEDELKVEKRKLQREVSFCLELFCYFGMPIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731495;
- 90% Identity
- iTF_00731495;
- 80% Identity
- -