Focc004992.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- ct
- Assembly
- None
- Location
- ML763019.1:1537582-1547620[-]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.4e-27 1.4e-23 82.6 0.0 3 72 68 138 66 143 0.94 2 3 2.9e-32 1.2e-28 98.8 0.0 2 77 568 644 567 646 0.96 3 3 5.7e-31 2.4e-27 94.7 0.0 4 75 853 925 851 929 0.95
Sequence Information
- Coding Sequence
- CTGCTGCGCGAGTCGGACGCCCTCAAGAGCCCCTTCCGCTTCGACGAGCAGCGGTCGCCGTTCCGCTTCTCCGAGGACCGCAGCCTCACGCCCAACGGCGTGATgatgggccggctgggcgagTCGCTCATCCCCAAGGGCGACCCGATGGAGGCGCGCCTGCAGGAGATGCTGCGCTACAACATGGACAAGTACGCCAACCAGAACCTCGACACGCTCAACATCTCGCGGCGCGTGCGCGAGCTCCTGTCCATCCACAACATCGGGCAGCGGCTGTTCGCCAAGTACGTGCTGGGGCTGTCGCAAGGCACCGTCAGCGAGCTGCTGTCCAAGCCCAAGCCCTGGGACAAGCTGACGGAGAAGGGCCGCGACTCGTACCGCAAGATGCACGCCTGGGCCTGCGACGAGCACTCCGTCATGCTGCTCAAATCGCTCATCCCCAAGAAGGGCAAGGAGGCCAGCCTGCCGCCCTTCATCGCCAGCGAGACGCCCGACATCACGGACGAGCGGATCGCGCACATCCTGAGCGAGGCCTCGCAGCTGATGCGCGTGCACAACCCCGACGACCTGCGCTCCAACGAGGACTCGCGGTCGCCGGCCGACAACCGGGGCGAGAGCGCGTCCCCGATGAACTCAAAGGACGGCTCGCCGAGCCGGAAGGTGCGCAAGTATGAGAACGACGACATCCCGCAGGAGAAGGTGGTCCGGATCTACCAGGAGGAGCTGGCCAAGATCATGGGCCGGCGCCTGGAGGAGAGcatgcggggcggcgcgcccggcgcccgaggccccggcgaccagcagccgccgcccttccccggcCTGCTCTTCCCGCACTTCAtggagggcgccggcgggctgccgctggcggcgcgctcccaGGACGACATCCGGCTCGCCCTCGACACGTACCACCGCGAGCTGGCCAAGCTCAACATGGCCCCCGCCATGGagggcctcaccccgcccgtcggcctgcccggcctgctggcactccagcagcaggcgctcgcccACCAGGCGCACGCCATGcaacagcagcagcagcagcagcagcagcaacagcagcagcaacaacagcagcaacaacagcagcagcaagagcaacaGGAGCGACGGGAGCCCCGTCAGAACGGTGAAGCACAGGATCTTTCTCTGCCCAAGGAGAGGAAGTCGGAGAGCCGCGACGGCCGAGACCGGGAGCTGAacggcggcgagcgggagcgcgagcgaggcgccgaCGGCGACCGCAGCGCGTCCGCCGAGGCCAACAACGCgagcgccgagcgggccgagcgcgccgagcgggccgagaggCTCAAGAAGGAGAtggccgaggccacggccgaGGCCCTGAGGCACGGCACTAGCGCCTTCTCCCTCGTCAGGCCCAAGGACGCACCCGGTAAGTACCGCGGCTTGTCTGCCTCCACCACTGCCCCGCGACCACCGCAGCGCGCTgacctctccgtctctcttgcaGGCGCCCCCACGGCCTCGCCCCTCAGCAACTCCATCCTGCCGCCCGACCAGGCCGGCGCCGACCTCTCCGGCACGGCGGCCGTGTCGCCGCTGCAGAGGATGGCGTCCATCACCAACAGCCTCATCTCGCAGCAGGCCTCGGCGCCGtcgcacaccaccaccaacccgaGGCCGCTCAAGGCCGTGCTGCCCCCAATCACCCAGCAGCAGTTCGACCAGTACAACAACCTCAACACGGAGGAGATCGTGCGCAAGGTCAAGGAGGCCCTCTCGCAGTACTCCATCAGCCAGCGCCTGTTCGGCGAGAACGTGCTCGGGCTGTCGCAGGGCTCCGTCTCGGACCTGCTGGCGCGGCCAAAGCCCTGGCACATGCTAACGCAGAAGGGCCGCGAGCCCTTCATCCGCATGAAGATGTTCCTGGAGGACGACAACGCCGTCCACAAGCTGGTCGCCTCGCAGTACAAGATCGCGCCCGAGAAGCTGATGCGCACCGGCGGCTACGGCGTCAACCCACCGATCCCCTCGTCGCGgtcgcaccccgccgcctcgcggctCGCCAACCTGCCGGAGGACATGCTCAGCCGGCTCAGCGACCAGCACGCGCACTCcaaggcggcgctgctgcagcacatgGCCGCGCACCCGGGCGTCCACCACGGCGCGCACCCGGGACACCCGGGCCACCCTGGCCACCCAGGCCTCCACCCCGGAcaggcgctggcgccgccgccgccgcccctgctgggctcgccgccctcgcacccgcgcctcggcggccaccacctccccggacacgagcaggcgcagggcccgccgcgcaccaccacgccgcagcagcgcgagcagcagcgcgaggcgcagGCCCAGCGGGAGGCTCAGCGCGAGCAGCGTGACCAGGCCcgcgagcgggagcagcgcgagcgggagcagagggagcgcgagcgggagcagcgggagcgcaacgccgaccagcagcgcgcggccgccgaccaGCACCGCGGGCCCTCGCCCTCACAGCTCCGCGGCCTGCCCCACCTCGCGCCCTCCGTGTACGAGATGGCCGCGCTCACCTCGGACCTCGACACCCAAACCATCACCACCAAGATTAAGGAGACCCTACTCGCCAACAACATTGGCCAGAAGATCTTTGGCGAGGTGGTGCTGGGACTGTCGCAGGGCTCCGTGTCCGAGCTGCTGTCCAAGCCCAAGCCGTGGCACATGCTGAGCATCAAGGGCCGGGAGCCCTTCATCCGCATGCAGCTGTGGCTGTCCGACCCGCTCAACATCGACCGGCTGCAGGCCCTCCGCAACGAGCGGCGCGAGGCGTCcaagcggcgccgcggctccggcgTCAACAACTCGGCCGCGTCCTCCACCCCCGGCGACAACTCGTCCGACACGTCCTCCAACGACACGAGCGAGTTCTACCACTCGacctcgcccgggccgccggccaagAAGCAGCGCGTGCTCTTCAGCGAGGAGCAGAAGGAGGCCCTGCGCCTGGCCTTCGCCCTCGACTCGTACCCCAACGTCGGCACCATCGAGTTCCTGGCCAACGAGCTGTCGCTGTCCTCGCGCACCATCACCAACTGGTTCCACAACCACCGCATGAGGCTGAAGCAGCAGGTGCCGCacagccccgcctcccccagcccccgAGAGCAGGCCTCCCCCGGTGGCCAGACGTTCGACCCCGTGCGCTTCCGGATGCTGCTGAACCAGCGGCTGATGGAGCTGCAGAAGGAGCGGCTCGGTGGCGTGGGGGCTGGCCTCGGCGCCGGACTCGGTGCTGGCCTCGgagccggcctcggcgccgggctgccgctgccttaCCCACCCTACTTCGCCGGCAACGCCAACCTGGCGGCGCTCATCTCTCgtggcctcctccccgccgcggccgccgcgggcttcGCCGGCCTCGCCGGACCCGAGCCCAAGGACTTCAACGGCCTGGACCTGTCCATCAAGCGCGAGagcgatgacgacgaggacgacgccatCTCCAACAACGGGTCCGAGGACTCGGCCTCTGACCTATCGAGACGCACGCCGCACAAGCCCGACCAgcaggcgctgctcgcggggctcgcagggctggcaggcctcaccaccccctcgccctcctcggggtcgggggcgccCAGATCCTCCAGCTCCAGACggaagcccgccgcgccgcagtgggTCAACCCCGACTGGCAGGAGTCCAAGGACAAAGAGGTCATTATCAACGGTGTGTGCGTGATGCAGACCGACGACTACAAGATCCGTGCCGAGGAGGAGACCGTGAGGGTCGAGCCCACCGCAGTCATGGACACGGAGCGCTTCAACGCAGAGCACGACGATGCCATGGATAGCGATGACGCCATGTCACCTCGCAACgtggcgccgcaccccgcgtcGTCCCCGCGAGGGTCACCCCTGCAGGGTGACGCGGATGACGGCGAGGACGATGCCGACGACATGGAAGTGGACGGTGGTCGAGGCTCCCCGTCGCAGGCCAGCCAGGACGAGCACGAGCCCCAGGAAAGGCGACGCGGCCTTGTGGACGATGGCGTGGACGAGGACAGGGACGGGCGGCCGTCCCCTTCGAGCTCACCTGTCCATACGGACGCAGAGCCCGCCCTCAGCTAG
- Protein Sequence
- LLRESDALKSPFRFDEQRSPFRFSEDRSLTPNGVMMGRLGESLIPKGDPMEARLQEMLRYNMDKYANQNLDTLNISRRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEHSVMLLKSLIPKKGKEASLPPFIASETPDITDERIAHILSEASQLMRVHNPDDLRSNEDSRSPADNRGESASPMNSKDGSPSRKVRKYENDDIPQEKVVRIYQEELAKIMGRRLEESMRGGAPGARGPGDQQPPPFPGLLFPHFMEGAGGLPLAARSQDDIRLALDTYHRELAKLNMAPAMEGLTPPVGLPGLLALQQQALAHQAHAMQQQQQQQQQQQQQQQQQQQQQQQEQQERREPRQNGEAQDLSLPKERKSESRDGRDRELNGGERERERGADGDRSASAEANNASAERAERAERAERLKKEMAEATAEALRHGTSAFSLVRPKDAPGKYRGLSASTTAPRPPQRADLSVSLAGAPTASPLSNSILPPDQAGADLSGTAAVSPLQRMASITNSLISQQASAPSHTTTNPRPLKAVLPPITQQQFDQYNNLNTEEIVRKVKEALSQYSISQRLFGENVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGVNPPIPSSRSHPAASRLANLPEDMLSRLSDQHAHSKAALLQHMAAHPGVHHGAHPGHPGHPGHPGLHPGQALAPPPPPLLGSPPSHPRLGGHHLPGHEQAQGPPRTTTPQQREQQREAQAQREAQREQRDQAREREQREREQREREREQRERNADQQRAAADQHRGPSPSQLRGLPHLAPSVYEMAALTSDLDTQTITTKIKETLLANNIGQKIFGEVVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDPLNIDRLQALRNERREASKRRRGSGVNNSAASSTPGDNSSDTSSNDTSEFYHSTSPGPPAKKQRVLFSEEQKEALRLAFALDSYPNVGTIEFLANELSLSSRTITNWFHNHRMRLKQQVPHSPASPSPREQASPGGQTFDPVRFRMLLNQRLMELQKERLGGVGAGLGAGLGAGLGAGLGAGLPLPYPPYFAGNANLAALISRGLLPAAAAAGFAGLAGPEPKDFNGLDLSIKRESDDDEDDAISNNGSEDSASDLSRRTPHKPDQQALLAGLAGLAGLTTPSPSSGSGAPRSSSSRRKPAAPQWVNPDWQESKDKEVIINGVCVMQTDDYKIRAEEETVRVEPTAVMDTERFNAEHDDAMDSDDAMSPRNVAPHPASSPRGSPLQGDADDGEDDADDMEVDGGRGSPSQASQDEHEPQERRRGLVDDGVDEDRDGRPSPSSSPVHTDAEPALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731257;
- 90% Identity
- iTF_00731257;
- 80% Identity
- iTF_00733000;