Fint001749.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- Prdm1
- Assembly
- GCA_033675135.1
- Location
- CM066248.1:9535793-9538500[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.46 3.9e+03 -3.0 0.2 30 38 241 249 238 251 0.83 2 8 2.4e-05 0.21 10.7 0.3 21 46 278 303 272 309 0.87 3 8 9.7e-05 0.83 8.8 0.0 21 44 306 329 302 334 0.90 4 8 0.00048 4.1 6.6 0.1 21 44 334 357 329 361 0.90 5 8 0.00048 4 6.6 0.1 21 46 362 387 358 394 0.86 6 8 0.03 2.5e+02 0.8 0.1 21 46 390 415 385 421 0.81 7 8 0.0017 14 4.8 0.2 21 52 418 449 410 451 0.92 8 8 0.0011 9.5 5.4 0.1 23 45 448 470 445 475 0.86
Sequence Information
- Coding Sequence
- ATGTCGAGTTCGGGGCCCctcccgccaggcgccgcccgctaCCCCAAGAGGACCGGCACCCGGGGCAAGGTGTACGCCGAGGACCCCGAcctggacgacgacgacttCCTGTTTTGCGACGACTGCGGGCGCGAGTGGGAGGGCGACTGCCCCGAGCACGGTCCTCTCCAGGTCGTCCCGGACACAGAGGTGGCGGCCGGTGCCCccgagcgcgcgctgcacacgGCGCCCAGCTCCCTGGCGGTGCTTCAGAGCAAGATCCCGGGCGCGGGCATGGGCGTCTGGGCCAAGGAGCCCATCCCACGCCGGGTGCGCTTCGGCCCCTACGAGGGAGACATCACCACCAAACGGGACACGGGCTACGGCTGGGAGATCCGCCGCGAGGGCAAGACGGTGCACTGCGTGGACGCGCTGGACGTCTCCCACTCCAACTGGATGCGGTACGTCAACTGTGCCCGGCACGCCGGCGAGGAGAACCTGTACCCCTACCAGCACAAGGGCCGGCTGTACTACCGCACAGTGACCGACATCCCGGCGCACGCCGAGCTGCTCGTGTGGTACGGCGACTCGTACGCCAAGGACCTGGGCATCGACCCCAAGGCGCACCGCGAGCCGGCCGCGGACGCGCGCCCCTACACCGGCGCCTTCCCCTGCGAGCTGCAGTGCGGCCTCTGCTTCGTGAGCCCGCTGCTGGTGGCCCAGCACCGGCGCTCAGGACAGTGTTACGCTGAGATCAAGCGCAGGCGAGCGTGCAGTGCGCCCGCGGCAGCGTCTGGGGCAGAGGGACAGGCCGCCGGCGTGTCGTCGGCACCAGCGCAGCTGACCACCACGCGGGAGAGACCCTacagctgcagcacctgcggggcggcgtttGCTAAGAGCTGCGACCTCCGTAGGCACATGCGCACCCACACGGGGGAGAAGCCCTacagctgcagcacctgcggggcggcgtttGTTCAGAGCTCCGACCTCCGTATTCACATGCGCACCCACACGGGGGAGAAGCCCTacagctgcagcacctgcggggcggcgtttGCTGATCGCTCGGCCCTCCGTAGGCACATGCGCACCCACACGGGGGAGAAGCCCTacagctgcagcacctgcgGGGCTGCGTTTGCTGCGAGCTGCGACCTCCGTACGCACATGCGCACCCACACGGGGGAGAAGCCCTacagctgcagcacctgcgGGGCTGCGTTTTCTGTTCGCTCGGCCTTCCGGACGCACATGCGCATCCACACGGGGGAGAGGCCCTacagctgcagcacctgcgGGGCTGCGTTTTCTGATCGCTCGGCCTTCCGGACGCACATGCGCATCCACACGGGGGCGAAGCCCTacagctgcagcacctgcggggcggcgtttGTTAGGAGCGACTATCTCCGAAGGCACCAGCTTGCTCAGCACGAATTCTCATAA
- Protein Sequence
- MSSSGPLPPGAARYPKRTGTRGKVYAEDPDLDDDDFLFCDDCGREWEGDCPEHGPLQVVPDTEVAAGAPERALHTAPSSLAVLQSKIPGAGMGVWAKEPIPRRVRFGPYEGDITTKRDTGYGWEIRREGKTVHCVDALDVSHSNWMRYVNCARHAGEENLYPYQHKGRLYYRTVTDIPAHAELLVWYGDSYAKDLGIDPKAHREPAADARPYTGAFPCELQCGLCFVSPLLVAQHRRSGQCYAEIKRRRACSAPAAASGAEGQAAGVSSAPAQLTTTRERPYSCSTCGAAFAKSCDLRRHMRTHTGEKPYSCSTCGAAFVQSSDLRIHMRTHTGEKPYSCSTCGAAFADRSALRRHMRTHTGEKPYSCSTCGAAFAASCDLRTHMRTHTGEKPYSCSTCGAAFSVRSAFRTHMRIHTGERPYSCSTCGAAFSDRSAFRTHMRIHTGAKPYSCSTCGAAFVRSDYLRRHQLAQHEFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732693;
- 90% Identity
- iTF_00732684;
- 80% Identity
- iTF_00732684;