Fint002849.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_033675135.1
- Location
- CM066250.1:9366487-9372698[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.4 3.4e+03 -4.0 0.2 25 41 94 110 92 126 0.68 2 3 1.1e-27 9.1e-24 83.2 4.3 1 82 150 239 150 243 0.77 3 3 4.4e-84 3.7e-80 268.4 14.5 79 300 254 472 246 472 0.92
Sequence Information
- Coding Sequence
- ATGCTCGATGGCCAGGTGaacggggcggaggaggcgggaggcaCCTCGTCTCCCAGTGACCCTGCGAAGACCGGCGCTGCCACCACCAACGCCGATGCACCTGCCGCGAAAGACGACGTTTCCGACGGCGCGACCTCCGATGTCGAGGACTTTGGCGACGTCCCCGACGTCCCCGACGGGGGCGTGCTGGAGAACCTCCCTCAAGAAGAAACAGCACCTGCCGACGAGatcactggcggggcggataaCAGCAGCAGTGCTGCGACCGGACAagatcagcagcagcaagatgaggaggatgacgacgacgacgaggccTACGAGGACGCGGAgttcgcgccgccgcccctcacgcgcggccgcagcagcagctcggtcGGGGCTTGGTTGACGGATGACGACGAGGAGAGCCTCATCGTGGACATTCTCCACAAGAGCACGGACCAAgcggaggcgcggctcgcggcccgcaggcaggccagggcggaggcgcgggagATCCGGATGCGGGAGCTGGAACGGCAGCAGAAGGAAGCCGAAGAGAATGCCGACCGGCTGTACGACATGCACCCTGAGACCGCCCTCcggacgccccccgcgcggtcTGTCAGCCAGCCGCGGACCCCCGTCgtcaacaacagcaacagtagcggcggcagtggcggcagcAACCACCAGTGGAGCCGGCGCTCCTCGGAGGACTCGCTGGAggatggcggtggcggtggtggcggcggcggcggctcgggcccCGGCTCTGCCGAGAGGGACGGCCGGTCGGTGCGCGACCTCCGGCACGAGCTCAAGGAGGTGGAGGACAAGTTCCGTAAGGCCATGATCCAGAACGCGCAGCTAGACAACGAGAAGGCTAGCTACACCTACCAGGTGGAACTGCTCAAAGACAAGGTGGAGGACTTGGAGGTGGCCTATGCCCAACTTCAGAGGGAAAATAGAGAGAAATGCCGTGAGGCTGATCAGCTCAAACGCCTTTCTCAGCGCCTGAAAGAAGATCTCGACATCTGTCGAGCAGCTCTAGAGGAACGAGATAGACTTATACAAGAACAAGGTCTGGTTATTGTTGGTGATGAAGGAGACCTTGATGGCTGTGAAGATGGTGAAAAGCAGGCACCTAGAAAAGCTCTTGTTTCAGTTGAGTCAGCAGAAATGTTACAAAAAGCTGGAGAAGGTTCACTAGATGTTCGACTGCGGAAGCTAGCTGAGGAACGCAATGAATTATTGGATCAGATTCGACATCTGAAGCTTGAATTAGAAGAGGAGCGTAGTAGACATCGAAATGGGCCCCGCACCCTCAATGGCCCTGCAGACTCCGATATGGAGGACCTACAAAgAGAAGCTCAAAAATTGCTAGGGGATTATAAATTTAAACTGCAAAAAGCAGAACAAGATGTTTCAACATTGCAGGCCAATGTTGCTAGACTGGAAAGCCAAGTTATTCGTTACAAATCAGCAGCAGAAACAGCAGAAAAGGTGGAAGATGAATTGAAAGTGGAAAAGAGGAAACTACAACGAGAGGATCTCTGA
- Protein Sequence
- MLDGQVNGAEEAGGTSSPSDPAKTGAATTNADAPAAKDDVSDGATSDVEDFGDVPDVPDGGVLENLPQEETAPADEITGGADNSSSAATGQDQQQQDEEDDDDDEAYEDAEFAPPPLTRGRSSSSVGAWLTDDDEESLIVDILHKSTDQAEARLAARRQARAEAREIRMRELERQQKEAEENADRLYDMHPETALRTPPARSVSQPRTPVVNNSNSSGGSGGSNHQWSRRSSEDSLEDGGGGGGGGGGSGPGSAERDGRSVRDLRHELKEVEDKFRKAMIQNAQLDNEKASYTYQVELLKDKVEDLEVAYAQLQRENREKCREADQLKRLSQRLKEDLDICRAALEERDRLIQEQGLVIVGDEGDLDGCEDGEKQAPRKALVSVESAEMLQKAGEGSLDVRLRKLAEERNELLDQIRHLKLELEEERSRHRNGPRTLNGPADSDMEDLQREAQKLLGDYKFKLQKAEQDVSTLQANVARLESQVIRYKSAAETAEKVEDELKVEKRKLQREDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -