Fint004743.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- -
- Assembly
- GCA_033675135.1
- Location
- CM066254.1:4395139-4429172[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 1.1e-06 27.1 0.0 4 81 13 94 11 149 0.85 2 4 2.9e-05 0.25 9.5 0.0 341 374 223 256 213 279 0.77 3 4 3.7e-07 0.0031 15.7 21.4 403 513 317 467 289 468 0.75 4 4 0.023 2e+02 -0.1 0.7 422 453 571 602 540 645 0.62
Sequence Information
- Coding Sequence
- ATGGCCCTACAGGATCATCTCAACGAGCTGTGCGTGGAGCGGGACCGGCTGCGCGAGCGCGACCGCCTGGCCCGTGCGCAGATGTCATCCCAAGCCCAGGCAGAccgcgaggccgaggcggccggcgcgccgctcttcGGGGCGCCCGTCCGGGTGAACCCCTCGTCGGCGGACCGGGTGACGCAGCAGATCCGCGACACGCTGGGCAACTACAACGCCGTCAAGCACCACCTGCTGCAGGAGCCCCTGCGCCTGTTCGGCATCGACGGCAAcgggccgcccacccccggcgggcctgccgccgccgcggccgctgcagccgccgccgcgggggccgcgggggcggcgggggcgggccccggggccggggcatcctcctcctcgtccgcccccggcggcggcgcctcgggcccggccgagttCAAGCGTCCCGCGCCAGGCTCGAGCGGCAACCACCACCGCAGccaccacccgccgccgcccgcgcaccgcggcggcttCCTCAAGCCCGCCGACGGCAAGCCCAACTactccgggcgcggccagtacccgggccaggccgtcaagcacggcggcgccgaccACCGCGCCAACGGCATCGTGCCCAACAAgggccctcccccgcagccgcaggggcCCCGCCAACGGCCCACCCTGCAGATCGACAGCGCTTCGGACAACTGCGCCGACGTGGAGAACATCCTGAAGGAGATGAAGTCGGGCCTGGTGACGCCGCTGACCGCCATCGCCGCCACCCCGAGGAAGGAGTGCGTGGACCCCAAGTTCAACTTCGacccggcgcacgcgcgcgcgcccctggcgggACCCAGGTCCAACCCGTACTCCACCGTGCCCCTGCAGGTCCCGAAGCTGCCGCCTCCGCAGCCGCTGAAGCAGGACCCACAGGGCGGCAAGCAGGACTCGGATGTTTCGACCGCCAGTTCACAGCGCAGCTACCTCGCTCCGGTCCGCGCCGAATCCAACCTGGAGAATGACCTGATCCTGTCTGAAGACAGCGATGACGACGGCGGCAAGGAGGCGCCTCCCACGGAGCAGGTCCCGAGCCCCGTGGACCTGCCGGTCAACGTGGACATCCTACCGCCGATGAGCGTgggtcctcccccgcccgtgCTGGACCCCATGTCGCCCTGCGGCAGCCCCGGCAGGAgtcccggccgcagccccgggcccgaccccggccccgggcccagcaaCAGCCCCGGGCACAACAGCAGCTCGtcgggctccggctccgggtcCGACTCGGGCTCCGACAGCGACTCCTCCAGCGAGGAGTCCGCCGAGGAGGCTGAGGTGCCCgagcagccaccgccgcccagcgtgctcctgccgccgcccggcgcctcgcccgagCCGCGCTGGAACCTCGAGTCCTTCTTGTCCCCGGGGAGGAGCGAGGCGGCCAACGATGCCGCCAGCGACGTCGCCGTCAAGAAGGAGGGCTTGATGCCGGCTCCCGAGGCGTCCGGCGCCAAGAAGTCGGTGAGCCCtctgccgcacccgcaccggccgttcgccccgccagcctcctcgtccgggcgcgccggcggcgcgctggggcgcggggggcgccgcggtggtggcctcGGCGGCATGGAGTCGGATCACAGCGACCACGGCAGCCTGGAGGTGCACGACGTGGTGCAAGAGGTGCTCGCCAACCCCCAtcccgcccttctctctcgcttctcCGACTCGGACGACTGTGCCAAGAAGCAGCCCGCCCAGCAACATGcacccgcctccgcgcccgccaccgcgcccgcctccgcgcccgcctccacgcccgcctccgcctccgcgcccgcggtcaagccgcggccgcgcagggcacggCTGCAGGAGAAGACACCTGCGCTGGTGCCTGAGTCTGACACGCCCTCCCGGGACGTGGCCCTGGACGCCGCCACCCTCGGTGTGACCGCAGCGCAAAGCGGCGCCCTCCTGGCactccagggcggccaggccctcaCCGACGTTGCCTCCGACACGGCGCGCCTCGGCGTCTCGGGCGCCAAGGCCGTCGctgacggcggcctcggccttgcccgcggcgccaccacccTCACCGCCGGAGGTGCCCGcgcgggcgtcggcgccgctGAGACCgtggccggcctcggcctgaacgcgaccagcgccgccaccaacATCGGCGCCGACTTCGCCAACACCGGGATCGACGCCGCCCAGGAGGTCGCCGacgccctcggcctcggtgGCATCGCCGGAACCGTGAACAAGGTGGCCCGTCAGGGCGTCTCCGCCGGCAGGTCCACCATCGGCGCCGGCGTCAacctcggccagggcgccacCAACCTGGCTGCCGGTGCCGCCAAGGGCGTCATCGGCGCCGGCGAGAAGGCCGTCCGCGCTGGCATCGGCGCTGGCCAGACCGCCACcaacgcggccgccggcgtcgcCCGCTCCGGCATCTCCGCCGCCCAGACCGGCGCCACCCTCGGCGTGGAGGCCGGCAAGGCCTTCACCAAgatggccgccggcgccgccaacaACGTGAtcggcgccctgcgcggctGA
- Protein Sequence
- MALQDHLNELCVERDRLRERDRLARAQMSSQAQADREAEAAGAPLFGAPVRVNPSSADRVTQQIRDTLGNYNAVKHHLLQEPLRLFGIDGNGPPTPGGPAAAAAAAAAAAGAAGAAGAGPGAGASSSSSAPGGGASGPAEFKRPAPGSSGNHHRSHHPPPPAHRGGFLKPADGKPNYSGRGQYPGQAVKHGGADHRANGIVPNKGPPPQPQGPRQRPTLQIDSASDNCADVENILKEMKSGLVTPLTAIAATPRKECVDPKFNFDPAHARAPLAGPRSNPYSTVPLQVPKLPPPQPLKQDPQGGKQDSDVSTASSQRSYLAPVRAESNLENDLILSEDSDDDGGKEAPPTEQVPSPVDLPVNVDILPPMSVGPPPPVLDPMSPCGSPGRSPGRSPGPDPGPGPSNSPGHNSSSSGSGSGSDSGSDSDSSSEESAEEAEVPEQPPPPSVLLPPPGASPEPRWNLESFLSPGRSEAANDAASDVAVKKEGLMPAPEASGAKKSVSPLPHPHRPFAPPASSSGRAGGALGRGGRRGGGLGGMESDHSDHGSLEVHDVVQEVLANPHPALLSRFSDSDDCAKKQPAQQHAPASAPATAPASAPASTPASASAPAVKPRPRRARLQEKTPALVPESDTPSRDVALDAATLGVTAAQSGALLALQGGQALTDVASDTARLGVSGAKAVADGGLGLARGATTLTAGGARAGVGAAETVAGLGLNATSAATNIGADFANTGIDAAQEVADALGLGGIAGTVNKVARQGVSAGRSTIGAGVNLGQGATNLAAGAAKGVIGAGEKAVRAGIGAGQTATNAAAGVARSGISAAQTGATLGVEAGKAFTKMAAGAANNVIGALRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -