Fint001539.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- ct
- Assembly
- GCA_033675135.1
- Location
- CM066248.1:4543499-4562260[+]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-27 3e-24 83.8 0.0 3 72 352 422 350 427 0.94 2 3 3.6e-32 7.6e-29 98.5 0.0 2 77 819 895 818 897 0.96 3 3 7e-31 1.5e-27 94.4 0.0 4 75 1111 1183 1109 1187 0.95
Sequence Information
- Coding Sequence
- atgatgatgacgatatTTCACGGAcatgacgacgacgaggaggaggaggtggaggtggaggtggagcaggaggaggaggaggaggaggaggaggaggaggagATCGCCCAGCTGGTGGAGGACGCCAACAGGCTGCGCTCCACcctgcggcagctgcaggagaGCTCGGCCAAGCAGATCGCCAAGCTggaggagcagcgcgagcaggagcagatgatggcgcagcggctgcagcagcggctgcaggagcagcaggactaCGAGCAGATCAAGCGCGAGCTGAGCATATACCGCGCCAGGGAGCTGTCgctggcggcggagcgggccgcggccgagagggcggccgccacggccgagcggggcgaggagcagcgGGCCTCTGaccgggagcgcgccgcgcagcgcctcgccgccgaggCCATGTCCCTCAAGATCAAGCAGGAGCTGCCAGATGGCGAGAAGGGCGCCCTCGACGCGTCCGAggacggcgcgcagccggaCGAAGAGCGGGCCTccctggccagcagcaggcccgggtcggcgcgctccgcctcgccggcgccgccccggtccaCGCCGTCGGCCAGCACGCccgtgcacggcggcgccaacacgaccaccaccacgcccgcgtcctcgccgcaccacgccgcgccgctgccgccgcacctgcTCGTCAACGGCTCGCCCAAGAGCCCGTCCGAGGAGGGCGGCCTgtgcagcaacaacaacaccctcagcagcaacaacaacctgctgtcggcggcgggcgcgcccggcctgctcggcccgcacAACGGGCTGTTCATGGGCCCcgtgccgcctggcctgcccggccaccACCTCAGCAACCTGCTGCGCGAGTCGGACGCCCTCAAGAGCACCTTCCGCTTCGACGAGCAGCGCTCGCCCTACCGCTTCTCCGAGGACCGCAGCCTCACGCCCAACGGCGTCATGatgggccggctgggcgagTCGCTCATCCCCAAGGGCGACCCCATGGAGGCGCGCCTGCAGGAGATGCTCCGCTACAACATGGACAAGTACGCCAACCAGAACCTCGACACGCTCAAcatcgcgcgccgcgtccgcgagCTGCTGTCCATCCACAACATCGGCCAGCGGCTGTTCGCCAAATACGTGCTGGGGCTGTCGCAAGGCACCGTCAGCGAGCTGCTGTCCAAGCCCAAGCCCTGGGACAAGCTGACGGAGAAGGGCCGCGACTCGTACCGCAAGATGCACGCGTGGGCCTGCGACGAGCACTCCGTCATGCTGCTCAAGTCGCTCATCCCCAAGAAGGGCAAGGAGGCCAGCCTGCCGCCCTTCATCGCCAGCGAGACGCCCGACATCGTGGACGAGCGGCTGGCGCACATCCTGAGCGAGGCGTCACAGCTGATGCGCGTGCACAACCCCGACGACCTGCGCTCGAACGAGGACTCGCGGTCGCCGGCTGACAaccggggcgagAGCGCGTCCCCGATGAACTCAAAGGACGGCTCGCCGAGCCGGAAGGTGCGCAAGTATGAGAACGACGACATCCCGCAGGAGAAGGTGGTCCGGATCTACCAGGAGGAGCTGGCCAAGATCATGGGCCGGCGCCTGGAGGAGAgcatgcgcggcggcgccccgggcgcccgcggccccggcgaccagccgccgccgcccttcccGGGCCTGCTCTTCCCGCACTTcatggagggcgcgggcgggctgccgctggcggcgcgctcccaGGACGACATCCGCCTCGCGCTCGACACGTACCACCGCGAGCTCGCCAAGCTCAACATGGCCCCCGCCATGGagggcctcaccccgcccgtcggtctgcccggcctcctcgccctgcagcagcaggcgctcgcgcagcaggcgcacgcCATGcagcagcaacagcaacagcagcagcgggagcaacagcagcagcagcaacagcaacaaaacCAACAGCAGCAACCGGAGCCCCGTCAGAACGGTGAAGCACAGGATCTTTCTCTGCCCAAGGAGAGGAAGTCGGAGAGCCGCGACGGCCGAGACCGGGAGCTGAACGGCGGCGAAcgggagcgcgagcgaggctccgacggcgaccgcagcgcgccggccgaggccaacagcgcgagcgccgagcgggcggagcgcgccgagcggctCAAGAAGGAGATGGCGGAGGCGACGGCCGAGGCCCTGAGGCACGGCACCAGCGCCTTCTCCCTCGTCAGGCCCAAGGACGCCCCCGgcgcccccACGGCCTCCCCCCTCAGCAACTCCATCCTGCCGCCcgaccaggccggcgccgaccTCTCCGGCACCGCGGCCGTGTCCCCGCTGCAGAGGATGGCCTCCATCACCAACAGCCTCATCTCGCAGCAGGCGTCCGCGCCCTCGCAcaccacccccaaccccaggCCGCTCAAGGCCGTCCTGCCCCCGATCACTCAGCAGCAGTTCGACCAGTACAACAACCTCAACACCGAGGAGATCGTGCGCAAGGTCAAGGAGGCCCTGTCGCAGTACTCCATCAGCCAGCGGCTGTTCGGCGAGAACGTCCTGGGCCTGTCGCAGGGCTCCGTCTCGGacctgctggcgcggccaAAGCCCTGGCACATGCTGACGCAGAAGGGCCGCGAGCCCTTCATCCGCATGAAGATGTTCCTGGAGGACGACAACGCGGTGCACAAGCTGGTCGCGTCGCAGTACAAGATCGCGCCCGAGAAGCTGATGCGCACCGGCGGCTACGGCGTCAATCCACCGATCCCCTCGTCGCGGTCGCATCCCgcggcctcgcgcctcgccaaCCTGCCGGAGGACATGCTGAGCCGGCTCAGCGACCAGCACGCGCACTCcaaggcggcgctgctgcagcacatGGCTGCGCACCCCGGcgcccaccacggcgccccccccggccacccgggccacccgggccaccccggccaccaccccgggcaggcgctggcgccgccgccgccgccgctgctcggctcgccgcccgcgcacccgcgcctcggcggccaccacctgcccggccacgacgcggcgcagggcccgccgcgcaccgccacgccccagcagcgcgagcagcagcgtgagcagcagcgggagcagcagcagcagcgcgaccagGCCCGCGAGCGtgagcagcgcgagcgggagcagcgggagcgggacctGCGCGAGCAGagggagcgtgagcgtgagcagcaccgcgcaggcgcgggcgcggccggcgccgccgaccAGCACCGGgggccctcgccctctccctcgcagCTCCGCGGCATGCAGCCCCACCTCGCGCCCTCCGTCTACGAGATGGCCGCGCTCACCTCCGACCTTGACACGCAGACCATCACCACCAAGATCAAGGAGACCCTGCTCGCCAACAACATCGGCCAGAAGATCTTCGGCGAGGTGGTGCTTGGCCTGTCGCAGGGCTCCGTGTCTGAGCTGCTGTCCAAGCCCAAGCCCTGGCACATGCTGAGCATCAAGGGGCGGGAACCGTTCATCCGCATGCAGCTGTGGCTGTCGGACCCGCTCAACATCGACCGGCTGCAGGCACTCCGGAacgagcggcgcgaggcgtccaagcgccgccgcggctctggCGTCAACAGCTCGGCCGCGTCGTCCACCCCGGGTGACAACTCGTCCGACACGTCCTCCAACGACACGAGCGAGTTCTACCACTCGacctcgcccgggccgccggccaagAAGCAGCGCGTGCTGTTCAGCGAGGAGCAGAAGGAGGCTCTGCGCCTGGCCTTCGCCCTCGACTCATACCCCAACGTGGGGACCATCGAGTTCCTGGCCAACGAGCTGCAGCTGTCGTCGCGCACCATCACCAACTGGTTCCACAACCACCGCATGCGGCTGAAGCAGCAGGTGCCGCacagcccggcctcgcccagcccccggGAGCAGGCCTCCCCCGGCGGCCAGACGTTCGACCCCGTGCGCTTCCGAATGCTGTTGAACCAGCGCCTGGTGGAGCTGCAGAAggagcggctcggcggcgtgggcgcgggcctgggcgccggcctgggcgcgggcctcggcgccggcctgggcgccggaCTGCCGCTGCCGTACCCGCCGTACTTCGCGAGCAACGCCAACCTGGCGGCACTCATCTCAcgcggcctcctccccgccgctgcggccgcgggcttcgccggcctcgccggccccgaGCCCAAGGACTTCAACGGCCTCGACCTGTCCATCAAGCGCGAGAGCGACGATGACGAGGACGATGCCATCTCTAACCCCGGGTCTGAGGACTCGGCGTCCGACCTCTCCCGGCGCACGCCGCACAAGAGCGACCAGCAGGCGCTGCTCGCAGGGCTCGCTGGCCttgcgggcctggcgggcgccaatccctcgccctcctcgggGGCGCCGAggtcctccagctccaggaggAAGCCTGCGGCGCCGCAGTGGGTCAACCCCGACTGGCAAGAGGCCAAGGACAAGGAGGTCATCATCAACGGCGTTTGCGTCATGCAGACCGATGACTACAAGAttcgcgccgaggaggagacGGTGCGCGTCGAGCCCACCGCCGTCATGGACACGGAGCGCTTCAACGCGGAGCACGATGACGCCATGGACAGCGATGACGCCATGTCGCCCCGCAACCCAGCGGCGCATCCGGCGTCGTCCCCGCGGGGGTCGCCCCTGCAAGGCGACGCGGAGGACGGTGAGGACGATGCCGACGATATGGAAGTGGACGGTGGGCGAGGCTCCCCCTTACAGGCCAGCCAGGACGAGCACGAGCCCCAGGAGAGGCGGCGAGGTATTGTGGACGATGTTGTGGACGGGGATCGGGACGGGCGGCCTTCCCCTGTGGGCTCACCGGTCCAAACGGAGGCAGAGCCGGCACTCAGTTAG
- Protein Sequence
- MMMTIFHGHDDDEEEEVEVEVEQEEEEEEEEEEEIAQLVEDANRLRSTLRQLQESSAKQIAKLEEQREQEQMMAQRLQQRLQEQQDYEQIKRELSIYRARELSLAAERAAAERAAATAERGEEQRASDRERAAQRLAAEAMSLKIKQELPDGEKGALDASEDGAQPDEERASLASSRPGSARSASPAPPRSTPSASTPVHGGANTTTTTPASSPHHAAPLPPHLLVNGSPKSPSEEGGLCSNNNTLSSNNNLLSAAGAPGLLGPHNGLFMGPVPPGLPGHHLSNLLRESDALKSTFRFDEQRSPYRFSEDRSLTPNGVMMGRLGESLIPKGDPMEARLQEMLRYNMDKYANQNLDTLNIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEHSVMLLKSLIPKKGKEASLPPFIASETPDIVDERLAHILSEASQLMRVHNPDDLRSNEDSRSPADNRGESASPMNSKDGSPSRKVRKYENDDIPQEKVVRIYQEELAKIMGRRLEESMRGGAPGARGPGDQPPPPFPGLLFPHFMEGAGGLPLAARSQDDIRLALDTYHRELAKLNMAPAMEGLTPPVGLPGLLALQQQALAQQAHAMQQQQQQQQREQQQQQQQQQNQQQQPEPRQNGEAQDLSLPKERKSESRDGRDRELNGGERERERGSDGDRSAPAEANSASAERAERAERLKKEMAEATAEALRHGTSAFSLVRPKDAPGAPTASPLSNSILPPDQAGADLSGTAAVSPLQRMASITNSLISQQASAPSHTTPNPRPLKAVLPPITQQQFDQYNNLNTEEIVRKVKEALSQYSISQRLFGENVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGVNPPIPSSRSHPAASRLANLPEDMLSRLSDQHAHSKAALLQHMAAHPGAHHGAPPGHPGHPGHPGHHPGQALAPPPPPLLGSPPAHPRLGGHHLPGHDAAQGPPRTATPQQREQQREQQREQQQQRDQAREREQREREQRERDLREQREREREQHRAGAGAAGAADQHRGPSPSPSQLRGMQPHLAPSVYEMAALTSDLDTQTITTKIKETLLANNIGQKIFGEVVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDPLNIDRLQALRNERREASKRRRGSGVNSSAASSTPGDNSSDTSSNDTSEFYHSTSPGPPAKKQRVLFSEEQKEALRLAFALDSYPNVGTIEFLANELQLSSRTITNWFHNHRMRLKQQVPHSPASPSPREQASPGGQTFDPVRFRMLLNQRLVELQKERLGGVGAGLGAGLGAGLGAGLGAGLPLPYPPYFASNANLAALISRGLLPAAAAAGFAGLAGPEPKDFNGLDLSIKRESDDDEDDAISNPGSEDSASDLSRRTPHKSDQQALLAGLAGLAGLAGANPSPSSGAPRSSSSRRKPAAPQWVNPDWQEAKDKEVIINGVCVMQTDDYKIRAEEETVRVEPTAVMDTERFNAEHDDAMDSDDAMSPRNPAAHPASSPRGSPLQGDAEDGEDDADDMEVDGGRGSPLQASQDEHEPQERRRGIVDDVVDGDRDGRPSPVGSPVQTEAEPALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731257;
- 90% Identity
- iTF_00731257;
- 80% Identity
- iTF_00732541;