Ffus006129.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- nfxl1
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000302.1:1722736-1726630[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.6 2.7e+04 -3.9 3.2 14 19 201 206 201 206 0.87 2 19 0.23 2.4e+03 -0.6 0.8 4 10 237 243 236 243 0.95 3 19 2.8e-08 0.00029 21.6 16.9 1 19 251 268 251 268 0.99 4 19 2.2e-09 2.3e-05 25.1 16.4 1 19 304 322 304 322 0.98 5 19 0.87 9.1e+03 -2.4 0.3 5 10 346 351 346 353 0.86 6 19 1.9e-06 0.02 15.7 11.0 1 19 357 375 357 375 0.95 7 19 9.8e-06 0.1 13.4 11.0 1 18 410 427 410 428 0.97 8 19 0.42 4.4e+03 -1.4 0.5 1 10 437 446 437 446 0.73 9 19 0.0039 41 5.1 19.7 1 18 462 479 462 480 0.97 10 19 1.3e-10 1.4e-06 29.0 15.0 1 19 489 507 489 507 0.99 11 19 0.94 9.9e+03 -2.5 0.8 5 10 535 540 535 540 0.93 12 19 0.0084 88 4.0 8.2 9 18 555 564 553 565 0.89 13 19 0.00035 3.6 8.5 8.1 1 12 575 585 575 585 0.96 14 19 1.1 1.1e+04 -2.7 5.7 14 19 613 618 613 618 0.89 15 19 0.0047 49 4.9 6.0 1 12 654 665 654 674 0.83 16 19 0.43 4.5e+03 -1.4 1.5 5 10 672 677 670 677 0.92 17 19 0.0038 40 5.1 17.0 4 19 687 702 685 702 0.94 18 19 3 3.1e+04 -4.5 1.9 15 19 736 741 735 741 0.59 19 19 2.9e-07 0.0031 18.3 11.1 1 16 746 760 746 766 0.86
Sequence Information
- Coding Sequence
- ATGGAAAGAAGACAGAAAGATAGCAGCAACCGCCCAAACCCCTGGCACCAGAAAAGAGGTGGCATTGGCGTTGGAGATGGTAGAGGAGGTTCATCTAGTGGTTCATCCAAAaatggaggagggaaggggtctaCTTCTAAACGGAGTGGTCCAGGAAGAGCTGTTGCTTCCCCTAGTCTTGATGGAGGCCAGAACTTTGAATCAAAAAGTAACTCCAAGTTTGATGAGGCAAGGTTGAAGATGGAAGCTGCTGTCAAGAAACATATGGTTCAAAACTATGAATCCTCTGATGAGGAAGATGACATTCAAGTGGACCCAATTGTTGGATCAGTACTTCAGTCTTACGCAGCTATAGGTGGTTCCAATGTAGATCTTGGTCGAACTCAACATTATTTAGAGGAATTATTTCAGTCTGGTGCAGCAACTTGCCTCATATGCATTGGCAGTGTAAAGAGAATTGATCCAGTTTGGAGCTGTTCTGCTTGTTTTTGCTTTCTTCACTTGATCTGCACTCAACGCTGGGCAAAGGATTCAATCTTACACCAGAAGCAAGCACTAGAAGATCTCCCCAGGGACAACCAACCTTCTAAAATATCTTGGCCATGTCCCAAATGCCGCAAGGAATATGGAACTGATTCTGTGCCTCAGAGGTATTTTTGTTTCTGTGGCCAAAAGGAAAATCCACCATATCATTCATGGCTAGTTCCTCACTCATGTGGTGAGACATGTGGACGACCCTTGCAACCTGCATGTGGACACACCTGTTTACTTTTATGTCATCCAGgTCCGTGCCCTCCTTGCCCAAAGACTGTTCGTGTGTCCTGCTTTTGTGGGAAAGAATTGCCTAAACCACAGCGATGCAGTCAAAAGTCTTGGTCATGTGGCAATGAATGTGGGGCTATTTTGTCATGTGGAAGTCATCGTTGTACTTCTCCCTGTCATCCTGGTGATTGCCAACCTTGCTCAAGAACAAGTGAACAGAAATGTGCCTGTGGTCTTCAAAAACAATTTCGCCCTTGTTCTTCTCCTGTCTGGAACTGTGACAAGGTATGTGGGAAAAAGCTACCTTGCACGTATCATAACTGTGAAAAAACTTGCCACTCTGGTTTGTGTGGTTTGTGCCCCCTTGGTCAAAATCGCACTTGTCCTTGTGGTAAAAGAACTTACATGCTGCCTTGCACTGAGGACATTCCTCCATGTGGTGATACATGTGGAAGAATGTTGAACTGTGGTATTCATGCCTGCCCTGAACGCTGTCACCGAGATAAATGTGGAACAtGTCTTGAGGTGACAATTAAACAGTGCCGTTGTGGGCTACACAAAAAAGAGTTGCCGTGCGCGAAAGAATTTCTGTGTGAGACAAAGTGTAAACGTTCTAAAGACTGTGGACGGCATCCATGTAACCGTAAGTGCTGTGATACACATTGCCCACCTTGTGAAAAGCTGTGTGGCCGTACTCTCACTTGTGGGCAGCATAAATGCGAGTCAGTTTGTCATCGTGGACCTTGCTATCCTTGCCCTCTAACTGCATCTGTCAGTTGCAACTGTGGAGGCACTGTGATAAATGTTCCATGTGGGCGTCAAAGAAGAACTCGTGCACCTCGTTGCAATAAGCTGTGTTTAAATCCTCCTGAGTGTCACCATGAAAGGAGAGAAAATCACTCCTGTCATTTTGGCCACTGCCCGCCATGCAATCAGGTGTGCAACCTGCAGTATACTTCATGTGGGCACAAATGCTCTAAGCCATGTCATTCTGCAGTTTGGGTGAAAGTTCAACAACAGGCACCAGCTGGTCCTTGGGAACTTGCAGCTCCCCAACTTGTGCTTCGTAATCTTCCTTGCCCTCCTTGCACgGAACCTATAAATGTTGTTTGTTTGGGTAGTCATGACAAATCAATGATGCCTTGCCATGCAGCAAAGTCTATGTCATGTGGAAAGAGGTGTGGCCAACCATTGAATTGTGGCAATCATTTCTGTGGCTTAGAGTGTCATCCAATCAATGAGAGCTGTGAAACATGTGAGAGTCCTTGTGAACTACCAAGGCCTGCAGGATGCCCTCATGAGTGCCGTCTCCCATGTCATCCAGCACCCTGTCCACCCTGCCGCACTACCCTGCGACCACGTTGCCATTGTGGTGTGACACAGCTTTTTATTAAATGTGGGGATTGGACACAACCAAATGTGGATCAAATAGCTATGATGTCATGTGGCAGTCCTTGTCCCAAAAGTTTTCCATGTGGACATAAATGTACATCATTATGTCATGCTGGTGATTGCCCCGATTCAGAAAAGTGCTCTAAGAAAACAAAAGTCTACTGTTCTTGTCGTAGAATAAAAAAAGAAGTACGCTGTGATGTAGCACGGTCATCTGAATTTTCTCTTCCATGTGATGAAACTTGTGAAGTACAGAAAAGTGAAAAGGAAAAGATGCAAGCAGAGGAAGCTAAGCGACGTCGCAccaaagaggaggaagaagctAGAATGGAAGCTGAACGTTTCCAGAAGAAAATTGAAGGGAGTGGTCGGCGAAAGAATCGCGGTCGCAACCATTGTGACGTTGCTGAAACAAATAACCAGCGCACTGTCTTGTATTCAATAATAACAGCAATTGTAGCTGTCTTTCTTGCATTGGTCTACTTTCTTTGGACATAA
- Protein Sequence
- MERRQKDSSNRPNPWHQKRGGIGVGDGRGGSSSGSSKNGGGKGSTSKRSGPGRAVASPSLDGGQNFESKSNSKFDEARLKMEAAVKKHMVQNYESSDEEDDIQVDPIVGSVLQSYAAIGGSNVDLGRTQHYLEELFQSGAATCLICIGSVKRIDPVWSCSACFCFLHLICTQRWAKDSILHQKQALEDLPRDNQPSKISWPCPKCRKEYGTDSVPQRYFCFCGQKENPPYHSWLVPHSCGETCGRPLQPACGHTCLLLCHPGPCPPCPKTVRVSCFCGKELPKPQRCSQKSWSCGNECGAILSCGSHRCTSPCHPGDCQPCSRTSEQKCACGLQKQFRPCSSPVWNCDKVCGKKLPCTYHNCEKTCHSGLCGLCPLGQNRTCPCGKRTYMLPCTEDIPPCGDTCGRMLNCGIHACPERCHRDKCGTCLEVTIKQCRCGLHKKELPCAKEFLCETKCKRSKDCGRHPCNRKCCDTHCPPCEKLCGRTLTCGQHKCESVCHRGPCYPCPLTASVSCNCGGTVINVPCGRQRRTRAPRCNKLCLNPPECHHERRENHSCHFGHCPPCNQVCNLQYTSCGHKCSKPCHSAVWVKVQQQAPAGPWELAAPQLVLRNLPCPPCTEPINVVCLGSHDKSMMPCHAAKSMSCGKRCGQPLNCGNHFCGLECHPINESCETCESPCELPRPAGCPHECRLPCHPAPCPPCRTTLRPRCHCGVTQLFIKCGDWTQPNVDQIAMMSCGSPCPKSFPCGHKCTSLCHAGDCPDSEKCSKKTKVYCSCRRIKKEVRCDVARSSEFSLPCDETCEVQKSEKEKMQAEEAKRRRTKEEEEARMEAERFQKKIEGSGRRKNRGRNHCDVAETNNQRTVLYSIITAIVAVFLALVYFLWT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733683;
- 90% Identity
- -
- 80% Identity
- -