Ffus004731.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000267.1:67468-74649[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8 8.2e+03 -2.2 0.0 27 40 48 58 41 69 0.60 2 4 0.021 93 4.0 0.1 26 45 71 90 63 96 0.89 3 4 2.8e-05 0.13 13.2 0.3 26 48 139 160 126 164 0.84 4 4 1e-05 0.046 14.6 0.4 19 48 203 232 187 236 0.87
Sequence Information
- Coding Sequence
- ATGTCACAACATGGATTAGATGCCAGTGATGCAGAACCAGGAGGAGGATCAGCAGCCGACAGCTTGGACGCGCTTGATGGCAGCTCTCTGCGGTCGGAGAACATTTTCGTGCCCGATGCCCAGGTTCCTGGCACATACTTCTGCACAGTGTGCTCAAAGGCAGTCCGGAACAAGTGGCACCACATGCAAGTACATTTTCCTGGAGAGCATAAGTGCAACATTTGTGAAGCAGTGTATACTCGTGTTGATAAGCTGAAAGCTCATCTTCGATCGAGCGATACATTTGCAGGGACTGAAATATCTCATTTAGATTTCTATGAGAAACTACCATTTGGTCAGGCTAAGTGTAAACTCTGCGGCCGAATAGTTTTGCACATGAAAAGCCACTTCAAGACGCATAAGCCTGATAAACGGCAGTGTCCTATCTGCCGGTTGACAATGCGCTCAGACAATATTAAACGCCACCTCAGAGACAGACATGGCGTTGCTCAAACATCATCAACCAACGAATTATCCCACAAACTATTTTTTGAGAGACTTCCCAATGGATTGATAATGTGCAAGATCTGTGGCAGGGCTGTCTCACACATGAAGAATCATTTTACAACGCATTCAAATGAAAAAGCTCAGTGCCCAGTCTGTTTTGTGTATCGTTCTAGGCCAGACAACTTAAAACGGCATATGAAAACAGCGCATCCAGACTATCCATTGTGA
- Protein Sequence
- MSQHGLDASDAEPGGGSAADSLDALDGSSLRSENIFVPDAQVPGTYFCTVCSKAVRNKWHHMQVHFPGEHKCNICEAVYTRVDKLKAHLRSSDTFAGTEISHLDFYEKLPFGQAKCKLCGRIVLHMKSHFKTHKPDKRQCPICRLTMRSDNIKRHLRDRHGVAQTSSTNELSHKLFFERLPNGLIMCKICGRAVSHMKNHFTTHSNEKAQCPVCFVYRSRPDNLKRHMKTAHPDYPL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00731969;
- 90% Identity
- iTF_00731969;
- 80% Identity
- iTF_00731969;