Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000001.1:691178-704249[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0017 7.5 7.5 0.2 18 35 77 94 72 100 0.78

2 9 0.0031 14 6.7 0.2 18 35 272 289 269 295 0.82

3 9 0.0049 22 6.0 0.1 18 32 467 481 464 487 0.83

4 9 0.003 13 6.7 0.2 18 35 575 592 571 598 0.82

5 9 0.0049 22 6.0 0.1 18 32 770 784 767 790 0.83

6 9 0.0045 20 6.2 0.1 18 32 885 899 882 905 0.83

7 9 0.0031 14 6.7 0.2 18 35 1000 1017 997 1023 0.82

8 9 0.0049 22 6.0 0.1 18 32 1195 1209 1192 1215 0.83

9 9 0.0068 31 5.6 0.0 18 31 1310 1323 1306 1339 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0017	7.5	7.5	0.2	18	35	77	94	72	100	0.78
2	9	0.0031	14	6.7	0.2	18	35	272	289	269	295	0.82
3	9	0.0049	22	6.0	0.1	18	32	467	481	464	487	0.83
4	9	0.003	13	6.7	0.2	18	35	575	592	571	598	0.82
5	9	0.0049	22	6.0	0.1	18	32	770	784	767	790	0.83
6	9	0.0045	20	6.2	0.1	18	32	885	899	882	905	0.83
7	9	0.0031	14	6.7	0.2	18	35	1000	1017	997	1023	0.82
8	9	0.0049	22	6.0	0.1	18	32	1195	1209	1192	1215	0.83
9	9	0.0068	31	5.6	0.0	18	31	1310	1323	1306	1339	0.88

Sequence Information

Coding Sequence: ATGTCCTCTGATGAGCCTCCTGTTTGCTGGTACGGGGTCATGCCTAACATTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCATCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGTTCTACCGCAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTGGTCGACATCACTGCGAGCGGCGAGCCCTCCACGCGGCAGTCATCCTGCCGCTACTGCCATGTCGTCAACGGGGCCCTCGGCCAGCAGGGTCCTCCTCCTGCGCCCGTGGACCCGACACCctacctcgcgcccgcgcccccggacACAGAGGAGTGGGAGGACAGAGTAAACGTTAATGTTCCACCTTCATCCAGCGTGTACCTTCCGAACTTCACCCGGGATAGCAATGCCCTCCGTGCGACTGGCACCAGGGGCACCAGCCAGGTGCCAGCCGTGGAAGCCACCAATAGAAGGATCGTCTACGTCACTCCTGAGATGTCCTCTGATGAGCCTCCTGTTCGCTGGTACGGGGTCATGCCTAACCTTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCGGCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGTTCTACCACAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTGGTCGACATCACTGCGAGCGGCGAGCCCTCCACGCGGCAGTCATCCTGCCGCTACTGCCATGTCGTCAACTGGGCCCTCGGCCAGCAGGGTCCTCCTCCTGCGCCCGTGGACCCGACACCctacctcgcgcccgcgcccccggacACAGAGGAGTGGGAGGACAGAGTAAACTTTAATGTTCCACCTTCATCCAGCGTGTACCTTCCGAACTTCACCCGGGATGGCAATGCCCTCCGTCCGACTGGCACCAGGGGCACCAGCCAGGTGCCAGCCGTGGAAGCCACCAATAGAAGGATCGTCTACGTCACTCCTGAGATGTCCTCTGATGAGCCTCCTGTTCGCTGGTACGGGGTCATGCCTAACCTTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCATCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGTTCTACCACAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTGGTCGACATCACTGCTGTTCTGATGCTGTTCTCAGTCACGTTGCAACCGACTCACCCTGTTTCATGTTCTTTCCAGATGTCCTCTGATGAGCCTACTGTTTGCTGGTACGGGGTCATGCCTAACATTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCGGCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGGTCTACCACAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTGGTCGACATCACTGCGAGCGGCGAGCCATCCACGCGGCAGTCATCCTGCCGCTACTGCCATGTCGTCAACGGGGCCCTCGGCCAGCAGGGTCCTCCTCCTGCGCCCGTGGACCCGACACCctacctcgcgcccgcgcccccggacACAGAGGAGTGGGAGGACAGAGTAAACTTTAATGTTTCACCTTCATCCAGCGTGTACCTTCCGAGCTTCACCCGGGATGGCAATGCCCTCCGTCCGACGGGCACCAGGGGCACCAGCCAGGTGCCAGCCGTGGAAGCCACCAATAGAAGGATCGTCTACGTCACTCCTGAGATGTCCTCTGATGAGCCTCCTGTTCGCTGGTACGGGGTCATGCCTAACCTTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCATCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGTTCTACCACAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTGGTCGACATCACTGCTGTTCTGATGCTGTTCTCATTCACGTTGCAACCGACTCACCCTGTTTCATGTTCTTTCCAGATGTCCTCTGATGAGCCTCCTGTTCGCTGGTACGGGGTCATGCCTAACCTTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCATCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGTTCTACCACAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTGGTCGGCATCACTGCTGTTCTGATGCTGTTCTCATTCACGTTGCAACCGACTCACCCTGTTTCATGTTCTTTCCAGATGTCCTCTGATGAGCCTCCTGTTCGCTGGTACGGGGTCATGCCTAACATTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCATCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGTTCTACCACAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTGGTCGACATCACTGCGAGCGGCGAGCCCTCCACGCGGCAGTCATCCTGCCGCTACTGCCATGTCGTCAACGGGGCCCTCGGCCAGCAGGGTCCTCCTCCTGCGCCCGTGGACCCGACACCctacctcgcgcccgcgcccccggacACAGAGGAGTGGGAGGACAGAGTAGACTTTAATGTTTCACCTTTATCCAGCGTGTACCTTCCGAGCTTCACCCGGGATGGCAATGCCCTCCGTCCGACGGGCACCAGGGGCACCAGCCAGGTGCCAGCCGTGGAAGCCGCCAATAGAAGGATCGTCTACGTCACTCCTGAGATGTCCTCTGATGAGCCTCCTGTTCGCTGGTACGGGGTCATGCCTAACCTTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCATCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCCTGAACGTGCAGTTCTACCACAGCAGGCGACCCAGCAGCGAGCAGGACGGGGCCTGCCCCATCTGCCTAGTCGACATCACTGCTGTTCTGATGCTGTTCTCATTCACGTTGCAACCGACTCATCCTGTTTCATGTTCTTTCCAGATGTCCTCTGACGAGCCTCCTGTTCGCTGGTACGGGGTCATGCCTAACCTTAAAGAAGCCCATGCTCTGATCCGTATGGCAGATGATGTGCTGCATGGCCTCTGGTTAGAGAAAAGGGACCCCTACGCTGCTCGTGCTAAGGACCTCGTCCAGGCTGTGGGCGACCCAGCTAGACTTACCGCTCTGCTCCGGGATGCACTCGTGAACGTGCAGTACTATCACAGCAGGCGACCCAGCAGCGAGCAGGACGGAGCCTGCCCCATCTGCCTGGTCGACTTCAATGGTGAGTCCGACGAGCCCCTGGGCCGCCACAACAAACGTCATCGTCGTCGTATGCACCAGCGAATGCaacgcctccgccgcccgcacctTCAGCTGGACAAGGACCAAATCCCTGCCCTCATCCTCCGCTGCCGCCATCTCCTGCACCGGCACTGCTGGCGCACGCTGCGGGAGACGGTGAAGGCGGACGTCATTGGCAGGGGTTTGACCTGTCCTctgtgccgcggccccgctgaCTCCGTCGTCCCGCTGGACTTGGTCCCCAAAGAGCAGTACATCCATTTCATCTGGGTGGCTGTCGCGACGCTTCGTCAGCTGACGCCTTGCAGCAGGGTCAGCAGCGGCGAGCCCTGCACGCGGCAGTCATCCTGCCGCTACTGCCATGTCGTCAACGGGGTCCTCGTCCAGCAGGGTCCTCCTCCTGCGCCCGTGGACCCGACACCctacctcgcgcccgcgccaccgGACACAGGGGAGTGGGAGGACAGAGTAAACTTAAATGTTCCACCTTCATCCAGCGTGTACCTTTTGAGCTTCACACGGGATGGCAATGCCCTCCGTCCGACTGGCACCAGGGGCACCAGCCAGGTGCCAGCCGTGGAAGCCACCAATAGAAGGATCGTCTACGTCACTCCTGAGGTGGCGAGGGCAGAGGTGCTGCCTGACGGCTCCCGGCGCTACAACACCCAGCTGCCACCCCGGAGTGAGCGAAGACGTCTGTGA
Protein Sequence: MSSDEPPVCWYGVMPNIKEAHALIRMADDVLHGLWLEKRDPYAARAKDLIQAVGDPARLTALLRDALLNVQFYRSRRPSSEQDGACPICLVDITASGEPSTRQSSCRYCHVVNGALGQQGPPPAPVDPTPYLAPAPPDTEEWEDRVNVNVPPSSSVYLPNFTRDSNALRATGTRGTSQVPAVEATNRRIVYVTPEMSSDEPPVRWYGVMPNLKEAHALIRMADDVLHGLWLEKRDPYAARAKDLGQAVGDPARLTALLRDALLNVQFYHSRRPSSEQDGACPICLVDITASGEPSTRQSSCRYCHVVNWALGQQGPPPAPVDPTPYLAPAPPDTEEWEDRVNFNVPPSSSVYLPNFTRDGNALRPTGTRGTSQVPAVEATNRRIVYVTPEMSSDEPPVRWYGVMPNLKEAHALIRMADDVLHGLWLEKRDPYAARAKDLIQAVGDPARLTALLRDALLNVQFYHSRRPSSEQDGACPICLVDITAVLMLFSVTLQPTHPVSCSFQMSSDEPTVCWYGVMPNIKEAHALIRMADDEKRDPYAARAKDLGQAVGDPARLTALLRDALLNVQVYHSRRPSSEQDGACPICLVDITASGEPSTRQSSCRYCHVVNGALGQQGPPPAPVDPTPYLAPAPPDTEEWEDRVNFNVSPSSSVYLPSFTRDGNALRPTGTRGTSQVPAVEATNRRIVYVTPEMSSDEPPVRWYGVMPNLKEAHALIRMADDVLHGLWLEKRDPYAARAKDLIQAVGDPARLTALLRDALLNVQFYHSRRPSSEQDGACPICLVDITAVLMLFSFTLQPTHPVSCSFQMSSDEPPVRWYGVMPNLKEAHALIRMADDVLHGLWLEKRDPYAARAKDLIQAVGDPARLTALLRDALLNVQFYHSRRPSSEQDGACPICLVGITAVLMLFSFTLQPTHPVSCSFQMSSDEPPVRWYGVMPNIKEAHALIRMADDVLHGLWLEKRDPYAARAKDLIQAVGDPARLTALLRDALLNVQFYHSRRPSSEQDGACPICLVDITASGEPSTRQSSCRYCHVVNGALGQQGPPPAPVDPTPYLAPAPPDTEEWEDRVDFNVSPLSSVYLPSFTRDGNALRPTGTRGTSQVPAVEAANRRIVYVTPEMSSDEPPVRWYGVMPNLKEAHALIRMADDVLHGLWLEKRDPYAARAKDLIQAVGDPARLTALLRDALLNVQFYHSRRPSSEQDGACPICLVDITAVLMLFSFTLQPTHPVSCSFQMSSDEPPVRWYGVMPNLKEAHALIRMADDVLHGLWLEKRDPYAARAKDLVQAVGDPARLTALLRDALVNVQYYHSRRPSSEQDGACPICLVDFNGESDEPLGRHNKRHRRRMHQRMQRLRRPHLQLDKDQIPALILRCRHLLHRHCWRTLRETVKADVIGRGLTCPLCRGPADSVVPLDLVPKEQYIHFIWVAVATLRQLTPCSRVSSGEPCTRQSSCRYCHVVNGVLVQQGPPPAPVDPTPYLAPAPPDTGEWEDRVNLNVPPSSSVYLLSFTRDGNALRPTGTRGTSQVPAVEATNRRIVYVTPEVARAEVLPDGSRRYNTQLPPRSERRRL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -