Ffus028592.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001444.1:3447896-3449149[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.016 73 4.4 0.0 21 45 17 41 7 49 0.80 2 14 0.74 3.3e+03 -0.9 0.0 21 45 45 69 37 76 0.80 3 14 0.036 1.6e+02 3.3 0.0 21 46 73 98 65 104 0.85 4 14 0.023 1e+02 3.9 0.1 21 45 101 125 97 133 0.82 5 14 0.88 3.9e+03 -1.2 0.0 21 46 129 154 125 161 0.80 6 14 0.067 3e+02 2.4 0.0 21 45 157 181 152 184 0.89 7 14 0.0012 5.4 8.0 0.0 21 46 185 210 177 217 0.81 8 14 0.043 1.9e+02 3.0 0.0 22 44 214 236 209 241 0.88 9 14 0.0031 14 6.7 0.0 21 45 241 265 230 273 0.82 10 14 0.27 1.2e+03 0.5 0.0 21 44 269 292 265 296 0.86 11 14 0.004 18 6.3 0.0 20 48 296 324 293 329 0.86 12 14 0.12 5.5e+02 1.6 0.0 20 44 324 348 321 352 0.79 13 14 0.0015 6.8 7.7 0.0 21 46 353 378 345 381 0.89 14 14 0.0028 13 6.8 0.0 21 47 381 407 377 413 0.86
Sequence Information
- Coding Sequence
- ATGTTCTCAACAGCTGAAAGTTTAAAATCTCATCTCCGCACCCATAGTGGTGAAAAGCCTTTTGAATGTACGATCTGCCACAAGATGTTCTCATTGGCTCATCATTTAAAAGACCATATCCGCACCAACACCGGTGAAAAGCCTTTTGAATGTACTGATTGCCACAAGACGTTTTCAAAAATTGCCAGTTTGAAGGTTCATCTCCGCACCCACACAGGTGAAAAGCCTTTTGAATGCTCGGTGTGCGGCACGATGTTCTCAACAGCTGAAAGTTTAAAATCTCATCTCCGCACCCATAGTGGTGAAAAGCCTTTTGAATGTACGATCTGCCACAAGATGTTCTCATTGGCTCATCATTTAAAAGACCATATCCGCACCCACACCGGTGAAAAGCCTTTTGAATGTACTGATTGCCACAAGACGTTTTCAAAAATTGCCAGTTTGAAAGTTCATCTCCGCACCCACACAGGTGAAAAGCCTTTTGAATGCACGGTGTGCGGCACGATGTTCTCAACAGCTGAAAGTTTAAAATCTCATCTCCGCACCCATAGTGGTGAAAAGCCTTTTGAATGTACGATCTGCCACAAGATGTTCTCATTGGCTCATAATTTAAAAGACCATATCCGCACCCACACTGGTAAAAAGCCTTTTAAATGCATGGTGTGCGGTAAGATGTTCTCGCAATCTTCCACTTTGAAATCTCATTTCCGCACCCACACTGGTGAAAAGCCTTTTGAATGCACGGTGTGCGGTAAGATGTTCTCGCAATCTTCCTCTTTGAAATCTCATTTCCGCACCCACACTGGTGAAAAGCCTTTTGAATGCACGGTGTGCGGCAAGATGTTCTCAAGACCTGAAAGTTTAAAATCTCATCTCCCTACCCACACCAGTGAAAAGCCTTTTAAATGCACGGTGTGCAGCAAGATGTTCTCAAGAGCTGAAAGTTTAAAAACTCATCTCCGCACCCACACCAGTGAGAAGCCTTTTAAATGCACGGTGTGCGGCAAGATGTTCCCATTGGCTCATCATTTAAAAGACCATATCCGCACCCACACTGGTGAAAAGCCTTTTAAATGCACGGTGTGCGGTAAGATGTTCTCGCAATCTTCCTCTTTGAAACCTCATCTCCGCATCCACACTGGTGAAAAGCCTTTTAAATGCCTTGTGTGCCTCAAAACGTTCACACAATCTTACGGTTTGAAATCGCACCTCCGCACCCACACTGAGGGAAAGCCTATTAAATGCACGGCGTGA
- Protein Sequence
- MFSTAESLKSHLRTHSGEKPFECTICHKMFSLAHHLKDHIRTNTGEKPFECTDCHKTFSKIASLKVHLRTHTGEKPFECSVCGTMFSTAESLKSHLRTHSGEKPFECTICHKMFSLAHHLKDHIRTHTGEKPFECTDCHKTFSKIASLKVHLRTHTGEKPFECTVCGTMFSTAESLKSHLRTHSGEKPFECTICHKMFSLAHNLKDHIRTHTGKKPFKCMVCGKMFSQSSTLKSHFRTHTGEKPFECTVCGKMFSQSSSLKSHFRTHTGEKPFECTVCGKMFSRPESLKSHLPTHTSEKPFKCTVCSKMFSRAESLKTHLRTHTSEKPFKCTVCGKMFPLAHHLKDHIRTHTGEKPFKCTVCGKMFSQSSSLKPHLRIHTGEKPFKCLVCLKTFTQSYGLKSHLRTHTEGKPIKCTA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732017;
- 90% Identity
- iTF_00732017;
- 80% Identity
- iTF_00732017;