Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010001376.1:1475757-1477757[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0036 0.31 12.3 0.5 2 23 67 88 66 88 0.95

2 17 2.8e-05 0.0024 19.0 1.7 1 23 96 118 96 118 0.98

3 17 1.3 1.1e+02 4.3 1.1 2 23 125 146 124 146 0.92

4 17 0.037 3.1 9.2 0.9 5 21 156 172 153 173 0.89

5 17 0.036 3.1 9.2 0.5 2 23 181 202 180 202 0.94

6 17 0.0028 0.24 12.7 2.0 1 23 208 230 208 230 0.97

7 17 3.9e-06 0.00034 21.7 0.3 1 23 236 258 236 258 0.96

8 17 0.0018 0.16 13.3 0.1 1 23 264 286 264 286 0.92

9 17 6.3e-06 0.00054 21.0 1.0 1 23 292 314 292 314 0.98

10 17 4.1e-05 0.0035 18.5 0.8 2 23 321 342 320 342 0.96

11 17 0.0048 0.41 12.0 0.2 1 23 366 388 366 388 0.96

12 17 0.038 3.2 9.1 0.1 3 23 396 416 394 416 0.96

13 17 0.03 2.6 9.5 1.9 2 23 423 444 422 444 0.94

14 17 2.4e-06 0.00021 22.4 0.4 1 23 450 472 450 472 0.95

15 17 0.00083 0.071 14.4 0.6 1 23 478 500 478 500 0.94

16 17 9.7e-05 0.0083 17.3 1.4 1 23 584 606 584 606 0.97

17 17 0.17 15 7.1 0.0 2 23 613 634 612 634 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0036	0.31	12.3	0.5	2	23	67	88	66	88	0.95
2	17	2.8e-05	0.0024	19.0	1.7	1	23	96	118	96	118	0.98
3	17	1.3	1.1e+02	4.3	1.1	2	23	125	146	124	146	0.92
4	17	0.037	3.1	9.2	0.9	5	21	156	172	153	173	0.89
5	17	0.036	3.1	9.2	0.5	2	23	181	202	180	202	0.94
6	17	0.0028	0.24	12.7	2.0	1	23	208	230	208	230	0.97
7	17	3.9e-06	0.00034	21.7	0.3	1	23	236	258	236	258	0.96
8	17	0.0018	0.16	13.3	0.1	1	23	264	286	264	286	0.92
9	17	6.3e-06	0.00054	21.0	1.0	1	23	292	314	292	314	0.98
10	17	4.1e-05	0.0035	18.5	0.8	2	23	321	342	320	342	0.96
11	17	0.0048	0.41	12.0	0.2	1	23	366	388	366	388	0.96
12	17	0.038	3.2	9.1	0.1	3	23	396	416	394	416	0.96
13	17	0.03	2.6	9.5	1.9	2	23	423	444	422	444	0.94
14	17	2.4e-06	0.00021	22.4	0.4	1	23	450	472	450	472	0.95
15	17	0.00083	0.071	14.4	0.6	1	23	478	500	478	500	0.94
16	17	9.7e-05	0.0083	17.3	1.4	1	23	584	606	584	606	0.97
17	17	0.17	15	7.1	0.0	2	23	613	634	612	634	0.96

Sequence Information

Coding Sequence: ATGGACCACTGGGAACACTGCAAGAGTCGACAACAATTGCAAGACAGTTTCGACTCCTCCAGCGTGTCTGATTCAGACACCACTGGTTCTGTTGACATTGGTGAGAAAAATAATAGTGATGATGATAGCATTGCGTACCATAGTGAAGGTGAGAAGACAGCAAATGAAGTATCCAGAAATGGAAACACGAATCGGCTTTCATGCACCCTTTGTAAACTTGAGTTTACCAACGAATTTGACTTAAAAGTTCATGAACAACTTCACTTGAGATCTGATGATAAGAAATATCCATGCTCTATTTGTGGAACCAAATTCTCTACTAGTTTACTTCTGCATAGTCATCTGAAGAGTCACCTAAAAACCCAATACTTGTCCTGCTCTCAATGTGGAATTCACTCCCTCTCAAAAGAAGAATATCTACGCCATATGGACTTCCATGTTTCCGAAAAATCCAATAGTTGTATAAAATGTCAAGAACAGTTTTCATCtccaaatgaattaaaaaaccACATTTGCAAGTCCAACAAGGAAAAGACTTTGTCTTGTCATGAATGTCTCATGAACTTTCAAACAGAGGAGGATCTAAAACTGCATGTGCTTGCACATTCTGATCAAATTCTATTTTTCTGCAATCAGTGTGATCTGAAATTTCATTTGCAAAGTGAACTTCAGTTACATGTTTTAATGCATCCAAAGCAgaagattttttcttgtttggaATGTGGTAAAGGTTTCTCCAAAGCAAGTGACTTGAGACGCCACAACCTAGTTCATACTGGAGAAAAACCTTTCCCGTGTATAGAATGTGGCTCTAAGTTTGGCACAAGTAGTCAGCTCAAAAGGCATGCTATCATACACACGGGATTTCGTCCCTATGCTTGCACAGAATGTGAGATGCGGTTCTACAAGGGAAGTGATCTTACTCGTCACATGAGaactcacacaggagaaaaGCTTTTGAAGTGTGATTTTTGTGGGAAAGGATTCATGCGGTTCAATGATCTGAAACGCCACATTTTGCTTCATGAAAGAGATAACTTTGCTAGTTCTTTTAAATTGGAATCTGCTAAAGAAAAAAGGGAGGAATTATCTCAATTCGCATGTGCAGAATGTAGGATTAATTTCCCAAACTCAGAAGAGTTTGAGAAACACAAACTTAATCATGGGGACAAAAAATTCCTTGCCTGTACTGAGTGTGATGCCAGGTTTCTTGAAAACTCTTTATGGGAAAAACACATGTCTTCACATTTAGTTGAAAGACAATTGTCATGTGCATTATGTGACCTCAAGTTTCATACAGTCAGTGATTTTAAGAAACACACCGTATCACATCTTCCGCAAAGGCGTTTCCCTTGTCCAGAGTGTGGAAAAAGCTTTGGGAAGCGAAGTGATTTTAAACGACACTCTGCAATCCACATGAAAGAAAAGCCATACGTCTGTAGTGAATGTGGTGTGTGTTATGCAGTGGAAAAGCAGCTGAGACGACACTCTGCTAATCATAGAGCTAATAAGTCAACATCTTCAAATGATTCTAATTATCAGGTGACAAGTAACACTCGCAGTACAAGAAGATGGCAGAATTCTGACATCTCCAATATAATTGATAAACAGTATAAGAAGTATTTCAAAGAAATAGCCAACCTTAACCAGTTAAATGAttcaaggcaggcaggcaaggaCAGTGGTCAGCAGTCAACTGTGGGAAATTTAAATTCGAAGCAGCCGAAAGTTGAATCAGGAAAAATGGAATTTTGTTGCTCTGTTTGTGGAGAAGGCTTCAGCAAAGCATCAAAACTTGTCAAGCATAGCTTAACACATTCCAATGAGACTGGAGTAGTGTGTGCCGTGTGTAAAGCTGAAGTTGGTTCAAGAGCGGCTCTTGAATCACACATTCTCACACATATAGAAGAAAAACCATTTCTTTGTATTGAATGTGGAGATGAATTTCACACTGAATGTGAACTTGAAGCACACTGTTCCAACCATATGAATACCTCATGA
Protein Sequence: MDHWEHCKSRQQLQDSFDSSSVSDSDTTGSVDIGEKNNSDDDSIAYHSEGEKTANEVSRNGNTNRLSCTLCKLEFTNEFDLKVHEQLHLRSDDKKYPCSICGTKFSTSLLLHSHLKSHLKTQYLSCSQCGIHSLSKEEYLRHMDFHVSEKSNSCIKCQEQFSSPNELKNHICKSNKEKTLSCHECLMNFQTEEDLKLHVLAHSDQILFFCNQCDLKFHLQSELQLHVLMHPKQKIFSCLECGKGFSKASDLRRHNLVHTGEKPFPCIECGSKFGTSSQLKRHAIIHTGFRPYACTECEMRFYKGSDLTRHMRTHTGEKLLKCDFCGKGFMRFNDLKRHILLHERDNFASSFKLESAKEKREELSQFACAECRINFPNSEEFEKHKLNHGDKKFLACTECDARFLENSLWEKHMSSHLVERQLSCALCDLKFHTVSDFKKHTVSHLPQRRFPCPECGKSFGKRSDFKRHSAIHMKEKPYVCSECGVCYAVEKQLRRHSANHRANKSTSSNDSNYQVTSNTRSTRRWQNSDISNIIDKQYKKYFKEIANLNQLNDSRQAGKDSGQQSTVGNLNSKQPKVESGKMEFCCSVCGEGFSKASKLVKHSLTHSNETGVVCAVCKAEVGSRAALESHILTHIEEKPFLCIECGDEFHTECELEAHCSNHMNTS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733361;
90% Identity: -
80% Identity: -