Ffus025026.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- LRRFIP2_1
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001411.1:2021076-2021834[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.16 2.5e+03 -1.7 0.1 25 40 92 107 83 133 0.59 2 2 2.5e-20 4e-16 60.0 13.0 1 41 148 188 148 191 0.96
Sequence Information
- Coding Sequence
- ATGCTCGATGGTCAGGTGaacggggtggaggagggaggcgccTCTTCTCCCAAGGACCCGGCTGCGAAGACCggcgctgctgccaccgccgACGGCGATGCAGCTGCGGCGGGAGACGACGTCTCGTCGGACGCCACGACCCCCGACGTCGAGGACTTCGGCGACGACTTCCCCGACGGTAGCGTGCAGGAAGAGAATCTCCCTCAAGCGGAAACGGCAGCTGCGGACGGACTCTCTTGTCGTGCGGATGACAGCGGCGCTCAGGatcagcggcagcagcaagatgaggacgacgacgacgatgacgacgccTACGAGGACGCGGAgttcgcgccgccgcccctcacccgcggccgcagcagcagttcGGTCGGGGCGTGGCTGacggaggacgacgaggagagCCTCATCGTGGACATCCTCCACAAGAGCACGGACCAAGCGgaggcgcggctcgcggcccgcaggcaggccagggcggaggcgcgggagATCCGGATGCGGGAGCTGGAGCGGCAGCAGAAGGAGGCCGAGGAGAATGCCGACCGGCTGTACGACATGCACCCTGGTGAGTATTGA
- Protein Sequence
- MLDGQVNGVEEGGASSPKDPAAKTGAAATADGDAAAAGDDVSSDATTPDVEDFGDDFPDGSVQEENLPQAETAAADGLSCRADDSGAQDQRQQQDEDDDDDDDAYEDAEFAPPPLTRGRSSSSVGAWLTEDDEESLIVDILHKSTDQAEARLAARRQARAEAREIRMRELERQQKEAEENADRLYDMHPGEY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -