Ffus005753.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- PAXBP1
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000293.1:1147662-1153180[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-31 2e-27 97.3 5.5 2 272 562 783 561 786 0.89
Sequence Information
- Coding Sequence
- ATGTCTTTCTTTAAAAAGCCCAAGAAAAATATTAGAAGACGCCCCTTAGGAGCTGGCGAAGAAGGTGCTGAAGAACATGGAGATCAAATGGATGTGGATGACGAAGAGCAAAGTATGGCTCTAATCAGGGAGAAAATAGCGAAAGCCAAGAAGAAAGAGCAGCGTAAACAAACATTATTGAGTTTTGAAGAAGACTTTAATGAAGCTGACGATGGGGAAGTTTTCCAAGTACGAAAGTCATCTCAAAGTAAGAAAATGATGAAGCTCCTAgacaaagagagaaagaaaaaaaaggaggtgaaaattgagaaaatggATACTGAAGAGGATGCACCTCGAAAGGACAAAGAGATAGTCACTGGCGATCTTGTTATGGTTGTAAAACAGAGTGAACCAGTTCGTCTGGCTGCACCTGTGTTGAATGGTCGTCAGGCTGAGTTGGCAGACCCGGACTACCAAAGTGACGATGAAGATGAACAAGATATAAAGCCTCAGAAACAAACACAACATAAATTTTCTCAGCCTGATAATATGAAAATAATTCTTGAAAGTGGACGTATTCCGGATGCTGCCATGATTCATGCAGCAAGAAAACGCAGACAGAGGGCAAGAGAAATGGGAGGAGATTTCATTCCTATTGAAGACACTCAAAAGTATAATAATTCTTCAACTAAGTCTCGTCTTGTTCGTGAAGATGACAATGATAACAGTGATGATGAGGAAGAACCTGTTCAAATGGCTGTACCCTCAGCTGCAAGGGATAGAGATCGGAAACGAGAAGCATTTATGTCTGTACAGAATGATGATAGTGATCATGAAAGTGACAAAGGTGAAGAAGAAGAATGGGAATCCCAACAAATTCGTAAAGGAGTAACTGGAGCGCAGCTTGCTGCAGTCCAACACGAAACTTTGTACCAGCAGCAGTATTCAATGCCCCTACATCCATCCACTCATTTGGATGCTTCATCTGTGGCTATGGATATGTCACCGTCTAACCCATGTTTATCAGAAAACACTGTGGAGACAGGCTCTGTGATAGAAAAAAGGTTTAGTGTTTTAAAATCCGAAAATGGCATTGATACGCCCCAAAATATTTCAGCCAAGCTGAAAGAGAGGTTAAAGGACCTACAAGAAGTTCATCGCAGACATTGTTTAGATCGAGACCAAGTTACTGATGATTTAGTTGCAACACAAAGTGAAGTCCAACGGCTTGAGGCTGAAACACCAAAACTTGCTGAGCGTTTTCGCTTTTACCAAGAGTTGCGTGGGTATGTCACAGACTTGGTAGAATGTCTTGACGAGAAGATGCCAATCCTTGTAAATTTGGAGCAGCGTATTCTCACTCTATGGCGTAAACGTGCAGAGGAGTTAGTTTCAAGAAGAAGACAAGATGTTCTTGACCAAGCCAATGAAAATGCGCCATCCAATGCTAAACGAAATAAGGAGGAGGAAGATTCCCGGACCCGGCGGGCTGCTGAAAGAGAAGGTCGTCGCATCCGAAGAAGTAAAGCTAGAGAATCTAGGAAATTGGGGAATATTAACCCCCCTAAACATCTTGATGGAATGTCAAGTGATGATGAAATGACTGAACTGGAAGTAACATCATTCCGTACTCAGAAAGATGCCATAGAGTCCGATGCTCAGCTCGTTTTCGAGGATGTTGTAGATGAATTCTGCACAGTTAGATCAGTACTGCAACACTTTGAAAAGTGGCGTGTCAAAGATTGGGAGTCCTACACAGAGGCTTATGTTAGTTTATGCATTCCTAAAGTTTTGTCCCCACTTCTTAGAATACAAATGCTTATGTGGAATCCGCTGTTGGATGAGTTTTCAAAGATTGAAAAAATGAAGTGGTTTGAGAATTTGCTTGTCTATGGCTTGGAAAATAATGAAACTGAAGAGAGCCTCAAAACTGATCCTGACCTTAAACTAATTCCCTTAGTCATAGAGAAGGTGGTGTTACCAAAACTCAAAGATGTTGTTGATGCAACCTGGGACCCTCTCTCTACCTCCCAAACCCAGAGACTAGTGCTGCTTTTGAGTCATCTCCTTCAGGAGTATCCATCGCTGGTGAGCTCAAGTAAACCCCTCAACAATTTACTCTCTACAATTGTTGAAAAAATGAAGTCTGCTGTGGAAAATGATGTCTTTATACCCATTTATCCTAGGCAGTTCTTAGATGCTAAATCTAGTCAGCCTGCAAATGTTGCTCCAGGAATGCCAGCATTCTTCCAGCGTCAGACTACTAGTGCAATTAAATTGCTCAGAAATTTACTCTGCTGGCAGGGTGTAGTTAGCGATTTAGTGCTTCAAGAAGTTGCTCTTGGTGCTCTTCTAAACCGATATCTTATGGTTGCACTTCGCACGTCTGATCCCATTGACGCAGCAGCAAAATGTCATATGATTGCAAGTACATTCCCTAAATGGTGGTTTCAAAGTGAAACAAAACTTCCACAACTACAAATGTTTGCTAATCAGTGCAAACACATAATAACTCTTCTAGATGTTACATCTCCTGCTGGAAGgcAAGGATTAGAAAGAATTAGTGTGATTTTAAAAACATTAGCACCAGTTATAACCCCagcctag
- Protein Sequence
- MSFFKKPKKNIRRRPLGAGEEGAEEHGDQMDVDDEEQSMALIREKIAKAKKKEQRKQTLLSFEEDFNEADDGEVFQVRKSSQSKKMMKLLDKERKKKKEVKIEKMDTEEDAPRKDKEIVTGDLVMVVKQSEPVRLAAPVLNGRQAELADPDYQSDDEDEQDIKPQKQTQHKFSQPDNMKIILESGRIPDAAMIHAARKRRQRAREMGGDFIPIEDTQKYNNSSTKSRLVREDDNDNSDDEEEPVQMAVPSAARDRDRKREAFMSVQNDDSDHESDKGEEEEWESQQIRKGVTGAQLAAVQHETLYQQQYSMPLHPSTHLDASSVAMDMSPSNPCLSENTVETGSVIEKRFSVLKSENGIDTPQNISAKLKERLKDLQEVHRRHCLDRDQVTDDLVATQSEVQRLEAETPKLAERFRFYQELRGYVTDLVECLDEKMPILVNLEQRILTLWRKRAEELVSRRRQDVLDQANENAPSNAKRNKEEEDSRTRRAAEREGRRIRRSKARESRKLGNINPPKHLDGMSSDDEMTELEVTSFRTQKDAIESDAQLVFEDVVDEFCTVRSVLQHFEKWRVKDWESYTEAYVSLCIPKVLSPLLRIQMLMWNPLLDEFSKIEKMKWFENLLVYGLENNETEESLKTDPDLKLIPLVIEKVVLPKLKDVVDATWDPLSTSQTQRLVLLLSHLLQEYPSLVSSSKPLNNLLSTIVEKMKSAVENDVFIPIYPRQFLDAKSSQPANVAPGMPAFFQRQTTSAIKLLRNLLCWQGVVSDLVLQEVALGALLNRYLMVALRTSDPIDAAAKCHMIASTFPKWWFQSETKLPQLQMFANQCKHIITLLDVTSPAGRQGLERISVILKTLAPVITPA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733114; iTF_01434946; iTF_00151422;
- 90% Identity
- iTF_00733114;
- 80% Identity
- -