Basic Information

Insect: Formica selysi
Gene Symbol: salm
Assembly: GCA_009859135.1
Location: CM020808.1:11238747-11253301[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.9e-05 0.0032 18.6 1.0 1 23 377 399 377 399 0.98

2 9 8e-06 0.0013 19.8 2.1 1 23 405 427 405 427 0.98

3 9 3.6 5.9e+02 2.0 3.3 3 23 794 814 793 814 0.92

4 9 3.5e-08 5.7e-06 27.3 0.6 1 23 820 842 820 842 0.97

5 9 4.8e-05 0.008 17.4 2.6 1 23 852 874 852 874 0.98

6 9 0.0099 1.6 10.1 3.2 2 23 1179 1200 1178 1200 0.97

7 9 0.025 4.1 8.8 1.0 1 14 1206 1219 1206 1220 0.92

8 9 4.7e-07 7.7e-05 23.7 2.1 3 23 1418 1438 1416 1438 0.96

9 9 1.6e-07 2.6e-05 25.2 0.9 1 23 1444 1466 1444 1466 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.9e-05	0.0032	18.6	1.0	1	23	377	399	377	399	0.98
2	9	8e-06	0.0013	19.8	2.1	1	23	405	427	405	427	0.98
3	9	3.6	5.9e+02	2.0	3.3	3	23	794	814	793	814	0.92
4	9	3.5e-08	5.7e-06	27.3	0.6	1	23	820	842	820	842	0.97
5	9	4.8e-05	0.008	17.4	2.6	1	23	852	874	852	874	0.98
6	9	0.0099	1.6	10.1	3.2	2	23	1179	1200	1178	1200	0.97
7	9	0.025	4.1	8.8	1.0	1	14	1206	1219	1206	1220	0.92
8	9	4.7e-07	7.7e-05	23.7	2.1	3	23	1418	1438	1416	1438	0.96
9	9	1.6e-07	2.6e-05	25.2	0.9	1	23	1444	1466	1444	1466	0.98

Sequence Information

Coding Sequence: ATGACTTCCGTGCGTTTTCGAAGTGATAGACCAATCAGAACAGAGGAATCGTTGTCACGATTGGTCAATCCTGATACAAAGCTTTTTTCAGTCAAACGTGAAGAAAATGACTTTGTATCAGACGGTGAGGAGAGCGGTGGTGGAGCAGGAGGCGAGGAAGCCGTCGATCTTACCGCGGCGAGATCTCATCAGGGCGATGAGGATGACAAGGATGCCGATGATCCTCTGGGCGAGGACGAAGAGGACGGCGGTGACGAACAAGACGAGCAATACGAGGACGAGGAGGGTTCGCGAAAACAGATTCGCCATCGACAGGACGCGGAAAACAACAATAATTTTGTCGGAAGTGGCTCAACCTCCGCTGGAATATTTCCACCTGCTGGAACTAGTCATGTCACTCTCGAGGCCCTTCAAAATACAAAAGTTGCGGTCGCGCAATTCGCTGCCACCGCCCTCGCTGGTGGAGCCGATAGCGACGCGGCATTACAGGATCTGGCCTTCTTACAAAGTACGCTGTATAATCTTCAGCATCAACAGGTACTCCAGTTACAGTTTATCAGCCAGCTTCAGCAACAATTATCGATCACTCAAAAGCAACCGGTAGCGCAACCGTCATCGATAGAGCCAACTGATAGCAAGGAGGCCTCGTCGTCTCCCATCATCCATCCGAAACCATTGTCGAGTCTCACATCACCACCTTCTTCTCGGCCACCGAGTCACCATCACTCATCACCAGCGCCACTGACGCCGAATCTACTTCAAGAACGACCCACCTCGACGAGCAGTGCCTCTCCATTGAATCTACCCCTGTCTTCGTCCGGCACTACATCGACTACCGCTACGAGTACCAGCAGTCAAATCTCACTGTCGCATCAAATGCCGCCTCTTTGCTCGATCAGCTCTTCTCTCGCCTCGTCGATCATAACGAATAATGATCCACCGCCCCTTCACGAGCCAAATACACTGGAGATGCTGCAAAAGCGTGCTCAAGAGGTTTTGGACAACGCGAGTCAAGGTCTATTGGCCAACAATTTAGCCGATGAGCTCGCATTTAGAGGCAGTAAAGGCTCACGGCTTTCGCCTTACGATTCGAAAACGAGCGGCGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGTGGCAAGGTCTTCGGCAGCGATTCAGCGCTACAGATCCACATACGATCCCATACAGGTGAGCGACCCTTTAAGTGCAACGTCTGCGGGAGCCGATTCACCACCAAGGGCAACCTGAAGGTCCACTTTCAGAGGCATACGGCCAAGTTTCCACACGTAAAGATGAATCCGAATCCCGTTCCAGAACATCTAGACAAATACCATCCGCCCCTCTTGCAGCAAATTGCTTCCGGGCAACGGCCAATATccccgccgccgccgcctcACGCCATTCATCATCCCTCGTGTCATCCGGCACGTAGGGAGCATAGTTTCCTACCACCACAGCCGCCTTTACCTCTCAGTCTTACATCGCCCAGTATGATCCTTTGCCGTTTACCAGTTATTAATCACCGGGACGATCAGGATGTGCCGGAAAACCTTAGTAAACCCGTAACCGCTGCTCCGCCGATGTCCCCTACTTCCCCCGCCGCTGTATCGAACTCTCATCATTCCTTTCACGACAATCatcaacaacaacaacaaaaacAACAACTCGAGCAGAGAGAGGAGATAAAGCTCGAACAGAGATCACCCGGACAGGACCAGTACCAGCAACGACTAATGAGCCAGGAAGACGCCGGGCGCATAACTCCGAAGAAAGAACCCGAGGAGACGGAGGAACCTGTAGAAACGGAAGAAGGCGAGGACTTTGAGGAGACAACGAGGCGATCTCTCAACTCACCTTCATCCTTAGTGAATCCGTCGTTTCAGCCGCAAGCGTACGAGGATTGTAGTATGGATAGCAAGATCAGCGGACGGTTAGAGGGCGACGGCGAGATGGAAATAGACGAAGAGACAGAGGAGCAACCGGAGAACCTCTCTGGCAAGGGTACGATCAATCGTTTGCCTCAACAGATGATGGCATATCCTGGAGCGTCTCCAGCTAGTAGTAGCGCGAGTAGCGGTAGTCTTCAGACATCCTTCGCCGGGATTCTATTCCCGAGCGCTCCGGCTCATCATCAAATACCTTCTCATCTTCCGACGGTTTCCACCGCTGGGCAGACGCCGACTGTCTCCGCGAACGAGATGATCGATCCGGCTAAGGATCCAGCGATCTATTCGAGCTTGTTACCGCGACCGGGTAGCAACGATAATTCCTGGGAAAGCTTAATTGAAATAACGAAAACTTCCGAGACGTCTAAATTGCAGCAGCTAGTCGATAATATCGAGCACAAACTGAGCGATCCTAATCAGTGTATTGTTTGTCATAGAGTGCTCTCATGCAAGAGCGCATTATTAATGCATTATCGCACTCACACGGGCGAGCGTCCGTTCAAGTGCAAGATTTGCGGTCGCGCGTTTACCACAAAAGGCAATTTAAAAACTCACATGGGAGTGCATAGGGCTAAGCCGCCGCTAAGAGTGTTGCACCAGTGTCCAGTGTGTCACAAGAAGTTCACGAACGCTCTCGTGCTTCAGCAGCACATACGCCTTCACACCGGCGAACCTACCGATCTTAGTCCAGAGCAGATTCAAGCCGCAGAAGTAAATGAGTTTCCGGGTTGTTATCCTCAACCTCAGCTTTCTTTCTTCCCGCAAGGATTTGCGCCGATTCATCCGACCGGTGCTGGCTTTACTTTAGGATTCCCTGGATCTAGGCAACCGACCATCGAGCAACAATCGCATGAAAATGACGTTGATTTGAAGGAGGAGTCTCAGCAACAACGGCAAAGATTTATGGAAGAACATAGCGAGGAGATGGAAGATCAGGATGACGAGGAGCAAGATCGCAGAGAAGACGACGATAGATGCGAGGTGAATCGCGATAGACGTAGTGCTGAAATGATGGAGAAAGAGCAGGAGCACGAGAACGAGGAAACCGAGCACAGAGACATGATACTTCCCATGTTTTCAACTTCGCTGGCGGCCCTCGAGAACCAAGTAAAGACCATCACGACGACGATCGCCACGACCACGATCGCGAATGTAGCCAGATCGCCGCCGTCCTTTCATCGATATAATGGTAGCGAAAAGAGCGACAGTTCGCCAATTTCCGGTGCCCCGCTCGATCTGACACCTCGCGCTTCGTCCACTCCGGCGTCGGTGGCTTCCGCGTCGCCGACAccgccgccgctgccgccACCGTCCCAGACTGTACCGTCGCACCATCCGTCGCATCCCTTCAGTATGTTTACTGGATTGCTGCAAGCAGTCTCGTCCGCACCCGTCACCAGCACGCCAGGCACGTCCAACATAAATAGCATCACGTCGATGAGCGCAATCAACCCGGGAAGCGCTCCCGGCAGCGGACCCCTAGCCTCGCTAACCACCTCAGCTGTACTAGCCGCGTCATCGACTTACAATCCGCTCGGTCTAGCTGTCGGAGGGCCAGCAGTACGTGGCAACACCACTTGTAAATTCTGCTACAAGACGTTCGCGTGCCAATCCGCATTGGAGATACATTATCGGAGTCATACGAAGGAACGACCTTTCAAATGCACTATATGCGACCGAGGTTTTTCCACAAAGAACGACGATTCCGGTCAGCAAGCATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCCCCCACAACCCAATCCCCAATACCACTCGTACCCGGCGAGATCGGCCGCCGGAAATCGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAGCGGAAGAACCGGGGGCGGACAGGAGCAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCACATGTTGACTCATAAGATTCGTGATATGCCGCCGCACCTATTCAGCGATGCAAAGCcacaacagcagcagcaacagcagcagcagcagcagccgcTATGTCAGGATCACGAAACTTCCAAGAGCCCGATGTGCACCGATGATTCGAGCCTACCGCCCCCGCctccaccaccaccaccaccccCACCGATGCCACCTACGTCAATCGAGTCCGCGATACCAATAAAGAGATCTCCGCCGGAAGGAGATTTGCCGGCGCCAAAGAGACCAGCCAACATGCCGAGCAAGCACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCGTCTTCGGCGCTCCAGATCCATATGAGAACCCACACTGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCGTTCACCACCAAAGGCAATCTTAAGGTGCATATGGGCACTCATATGTTCACCAACGGAACATCACGTCGAGGACGACGAATGTCATTGGATCTACCTCCTCTGCCAATCACACCCAAGGACTCGGAGTTTCTGCAACGACGACCGGACCTTTTTTACCCATATCTTCCCGCACCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATCTCGGTGATTCAAAGTAACAACGGATTACCGCCTCATTCTTTGGGCGCGGGCAAATACGCGGCGAGTCTGTTCGGCTCGGTGTACGGGGCCGGCGGGGGCGGTTTTCCCTTGGATAAGCAGCCGATGGCGCCAACCAGTAACGGACCCCTGATGGATGGCAAACCCGCTGTTCCATCGGGCTCTATGCTCTTCCAAACGCCGTCGCCCACGCACTCACCCGGCGCGCCATCATCCAATGGCGGTAATCAAAACTCAATTAACGTGCCGTCCTGGACTGGTGACGCTCTTCAGCACCATTTCGACCGAGAGACACCGAGCAGAACCGAGAACGACGCCACGCCACCCACCGCCGCCCGTCTACCACCGCCACCGACGAGGGGAGAAGGATTAGCCGCGTGA
Protein Sequence: MTSVRFRSDRPIRTEESLSRLVNPDTKLFSVKREENDFVSDGEESGGGAGGEEAVDLTAARSHQGDEDDKDADDPLGEDEEDGGDEQDEQYEDEEGSRKQIRHRQDAENNNNFVGSGSTSAGIFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSDAALQDLAFLQSTLYNLQHQQVLQLQFISQLQQQLSITQKQPVAQPSSIEPTDSKEASSSPIIHPKPLSSLTSPPSSRPPSHHHSSPAPLTPNLLQERPTSTSSASPLNLPLSSSGTTSTTATSTSSQISLSHQMPPLCSISSSLASSIITNNDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGSKGSRLSPYDSKTSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPISPPPPPHAIHHPSCHPARREHSFLPPQPPLPLSLTSPSMILCRLPVINHRDDQDVPENLSKPVTAAPPMSPTSPAAVSNSHHSFHDNHQQQQQKQQLEQREEIKLEQRSPGQDQYQQRLMSQEDAGRITPKKEPEETEEPVETEEGEDFEETTRRSLNSPSSLVNPSFQPQAYEDCSMDSKISGRLEGDGEMEIDEETEEQPENLSGKGTINRLPQQMMAYPGASPASSSASSGSLQTSFAGILFPSAPAHHQIPSHLPTVSTAGQTPTVSANEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPGCYPQPQLSFFPQGFAPIHPTGAGFTLGFPGSRQPTIEQQSHENDVDLKEESQQQRQRFMEEHSEEMEDQDDEEQDRREDDDRCEVNRDRRSAEMMEKEQEHENEETEHRDMILPMFSTSLAALENQVKTITTTIATTTIANVARSPPSFHRYNGSEKSDSSPISGAPLDLTPRASSTPASVASASPTPPPLPPPSQTVPSHHPSHPFSMFTGLLQAVSSAPVTSTPGTSNINSITSMSAINPGSAPGSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKNDDSGQQACSCADQPFAAKGPIPPQPNPQYHSYPARSAAGNREKPKRRRRRPEERKNRGRTGAGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFSDAKPQQQQQQQQQQQPLCQDHETSKSPMCTDDSSLPPPPPPPPPPPPMPPTSIESAIPIKRSPPEGDLPAPKRPANMPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPPHSLGAGKYAASLFGSVYGAGGGGFPLDKQPMAPTSNGPLMDGKPAVPSGSMLFQTPSPTHSPGAPSSNGGNQNSINVPSWTGDALQHHFDRETPSRTENDATPPTAARLPPPPTRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_00869103;
80% Identity: -