Fsel014263.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- -
- Assembly
- GCA_009859135.1
- Location
- CM020814.1:1755431-1756261[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00066 1.7 9.2 0.1 7 31 19 43 18 50 0.88 2 2 2.9e-06 0.0077 16.7 0.0 4 29 64 89 62 91 0.94
Sequence Information
- Coding Sequence
- ATGTCTCATATccaaagaattaaaaatcaattagaattaagaaataaaCGCGAGGCAGCAGTAAAAGCTGTTTTAAGTGGAAAGAAGGATGTGAAAGCCGCTGCAATAAGCTATGGAGTTAATCAAAGAATCTTGAATCGTAAACTAAACCTTTTAAAAGGGCTGGACAAATATTATGAATTGAAATCTAAATTCGAATCAGCAGTGAAGGAATATTTAACTGGAGGAACTACTATAAAAGCCGCTGCAAATCACTATGGAATTAGTCAAATAATTCTGACGAAAGAAATTGATCTCTTTATAAAAGAGAACGACATATGGAGGGCATCGTACAAATACAGCAGATATTTTGAACGTACagcaatttttacaattagaGAGGAAATTCTGTTAATAAAGGATTTATTTTTCTGGAAAAAGATGTTTCAACCATATTGCTTTTGTCAACTATGCGCGATGGAACAACTGTTGATTTTAGCAAATCAGTACGCTCGAAACACAGGGAAAGTATATCTAGAAGAAAGGAATGAAACTAAAATGGTAGAATGGCTTTCCAAATTCGAAATGAGATTAAGCAATTTCATCTCAAGAAACTTTATATCTAATTGTATAAAAGTACCAACTAAAACTCAAACGTTGGCAAACAAATCAAAATCTTCACTGTTGCTTGTTTCCAAATCGGTACACGATAACGAtctacagaaaaaaaattttgaccAATCGCGAATTCGCAATGTTAAAGATAAATCTACACAAACGGATCAGGAAATTGCATCCATCGTTGCTGAAAATGATCAGCCTATGGACCTAAGGATCAAACAAAAAcgttaa
- Protein Sequence
- MSHIQRIKNQLELRNKREAAVKAVLSGKKDVKAAAISYGVNQRILNRKLNLLKGLDKYYELKSKFESAVKEYLTGGTTIKAAANHYGISQIILTKEIDLFIKENDIWRASYKYSRYFERTAIFTIREEILLIKDLFFWKKMFQPYCFCQLCAMEQLLILANQYARNTGKVYLEERNETKMVEWLSKFEMRLSNFISRNFISNCIKVPTKTQTLANKSKSSLLLVSKSVHDNDLQKKNFDQSRIRNVKDKSTQTDQEIASIVAENDQPMDLRIKQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729979;
- 90% Identity
- iTF_00729979;
- 80% Identity
- -