Fexs000689.1
Basic Information
- Insect
- Formica exsecta
- Gene Symbol
- -
- Assembly
- GCA_003651465.1
- Location
- NW:741483-743715[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.001 1.1 8.3 0.1 7 30 43 66 42 74 0.90 2 2 3.4e-06 0.0037 16.3 0.1 4 29 88 113 86 115 0.94
Sequence Information
- Coding Sequence
- ATGCGTTTCGCACAGTTGTTTGTTATTCTTATCCAGATACACTTGTGTTCTCGTATCTATTTgGTTATTATAATGTCTCATAtccaaagaattaaaaatcaattagaattaagaaataaacgCGAGGCAGCAGTAAAAGCTGTTTTAAGTGGAAAGAAGGATGTGAAAGCCGCTGCAATAAGCTATGGAGTTAATCAAAAAATCTTGAATCGTAAACTAAACCTTTTAAAAGGACTGGACAAATATTATGAATTGAAATCTAAATTCGAATCAGCAGTGAAGGAATATTTAACTGGAGGAGTTACTATAAAAGCCGCTGCAAATCACTATGGAATTAGTCAAATAATTCTGACGAAAGAAATtgaactttttataaaagagaacgACATACGGAGGGCATCGTACAAATACAGCAGATCTGTTGAACGTACagcaatttttacaattagagAGGAAATTCTGTTAATAAAGGATTTATTTTTCTGGAAAAAGATGTTTCAACCATATTGCTTTTGTCAACTATGCGCGATGGAACGACTGTTGATTTTAGCAAATCAGTACGCTCGAAACAGAGGGAAAGTATATCTAGAAGAAAGGAATGAAACTAAACTGGTAGAATGGCTTACCAAATTCGAAATGAGATTAAGCAATTTCATCTCAAGAAACTTTATATCTAATTGTATAAAAGTACCAACTAAAACTCAAACGTTggcaaataaatcaaaatcttCACTGTTGCTTGTTTCCAAATCGGTACACGATAACGatctacagaaaaaaaattttgaccaATCGCGAATTCGCAATGTTAAAGATAAATCTACACAAACGGATCAGGAGATTACATCCATCGTTGCTGAAAATGATCAGCCTATGGACCTAAGGATCAAACAAAAAcgttaa
- Protein Sequence
- MRFAQLFVILIQIHLCSRIYLVIIMSHIQRIKNQLELRNKREAAVKAVLSGKKDVKAAAISYGVNQKILNRKLNLLKGLDKYYELKSKFESAVKEYLTGGVTIKAAANHYGISQIILTKEIELFIKENDIRRASYKYSRSVERTAIFTIREEILLIKDLFFWKKMFQPYCFCQLCAMERLLILANQYARNRGKVYLEERNETKLVEWLTKFEMRLSNFISRNFISNCIKVPTKTQTLANKSKSSLLLVSKSVHDNDLQKKNFDQSRIRNVKDKSTQTDQEITSIVAENDQPMDLRIKQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00730658;
- 90% Identity
- iTF_00730658;
- 80% Identity
- -