Fsel007083.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- -
- Assembly
- GCA_009859135.1
- Location
- CM020816.1:6675487-6678083[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-13 9.4e-10 38.9 0.1 3 38 124 158 122 162 0.92 2 2 6.1 1.6e+04 -3.5 0.0 30 38 186 194 186 196 0.84
Sequence Information
- Coding Sequence
- ATGAAATGTACTCTAAAAATGTCAATGTTCATCGCATGCTGCTTAGATGTAGATGTCTTAAGTTCGCTCGTTTGGGAGGACTATCAGATACTCAGCACGAGCACGGCAAGCAGAGTTAACAGTTACGTGGAACGCAAGTTTAGATTCAAACATATGGATCACATCGCGGGTAGGTACAAGTGCTCCAAGTGCGCCAAGTCGTATCGATGGAAGCATCATCTCGTGGAGCACGTCAAGGCCTCATGCGGTCAGAAGAAAGCGGAGTGCTGTCCCTACTGCAGTTATAAAAGCAATCAATCATTTGCTTACGAGACCCGTTTACGAAACACGAGATATACGATGAAGTCGCGAAGATCTAAACGCAATTCGGAACAGGTGACGAGAGCCATAGAAGCCGTCGCCGGTGGAATGTCCTTGAGGAAGGCTGCAAAGATGTACTCCATATCCAAATCGGTTCTACATCGATACAGCAAGCATGATGGGCGCGCGGTGAACTACTTAAATTGCCTGAGGGAAACATATCCGTGTAAGAACTGCGGCAAGATCTACAACTATTACTCCAGCCTGGCCAGGCATCTGAAGCACGAGTGCGGCGTGGAGCCCAAGTTTCACTGTCCCCTGTGCCCTTACAGAACGAAGCACAAATCGAGCCTAAACACCCACCTAAATGGCAGGCACATGAAGCGATTGAACGAATTTTACACTTTGCCCAACGGTAACAAGATGTCTTCAACGGACGCCAGAAACTGA
- Protein Sequence
- MKCTLKMSMFIACCLDVDVLSSLVWEDYQILSTSTASRVNSYVERKFRFKHMDHIAGRYKCSKCAKSYRWKHHLVEHVKASCGQKKAECCPYCSYKSNQSFAYETRLRNTRYTMKSRRSKRNSEQVTRAIEAVAGGMSLRKAAKMYSISKSVLHRYSKHDGRAVNYLNCLRETYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKRLNEFYTLPNGNKMSSTDARN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00264194;
- 90% Identity
- iTF_01245142;
- 80% Identity
- iTF_00731095;