Fsel006779.1
Basic Information
- Insect
- Formica selysi
- Gene Symbol
- bab2
- Assembly
- GCA_009859135.1
- Location
- CM020816.1:6810157-6841627[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.4e-12 2e-08 34.6 0.0 1 39 384 423 384 427 0.90 2 4 2.6e-12 7e-09 36.1 0.1 2 39 439 476 438 479 0.94 3 4 6e-19 1.6e-15 57.3 0.0 1 45 493 538 493 538 0.97 4 4 1.1e-18 2.9e-15 56.5 0.1 1 42 545 587 545 588 0.97
Sequence Information
- Coding Sequence
- ATGGCCCGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAACTACCAGTCGAACATGACGTCCGTGTTTCACCAGCTCCTGCAGACCGAAGCCTTCGTCGACGTCACCCTGGCATGCAACGAGGCTTCGTTAAAAGCGCATAAGGTGGTCCTGTCGGCCTGTAGTTCCTACTTTCAAAAACTCCTGCTGTCGAACCCCTGTAAACACCCGACCATCATCATGCCGCAGGACGTGTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGTGGGGAGATCGACGTCTCACAAGCGGAGCTTCAGTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCCTCAGCTCGCCGCCGAGGGAATCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCATCATCAACGGTACAAGCGACCCAGAATCGAACGGCCCACGTTCGAGCCGCGCGCTACCGATCCAAGACATTACGAGCGCTACAAAGAGGAAGAGGCGATTACAATCAACGATTATAGCCGCGATAACAAAGAAAACCATCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCACTGGAAACTTGCCAACGTaataacaacaacaacaacggTAACGGCGCGAGTAACAACAACAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCACCATCCTGATCCCGGGGAAGTCGATTTACCCCCCGAAACCCAACCCACTCCACCCAGCGCCACCTTGGTCGGCACTACCATCACCCATCTAAGGGATCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGAGATCAAGATCAAGTTCGAGACGTTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCAGATCGGGCTAGCGTGAGCTCGAAAAATGCCGCCGACAGCGACAACATGATGATGATAACCCCAGAGCTGCTTGGACTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCAGGCGACAACAATTCGAGGGGGCATTCTGGACAGTCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAAGAGGACATGGACGCGGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGGCAACGTTCAATATTCCCTCGACGACTCTGTGGCAACGAGCGCATCGACTGGGCATCGACACGCCCAAGAAGGATGGTCCCACGAAATCCTGGAGCGACGAAAGCTTAAACAACGCTTTAGAAGCTTTACGTACTGGCACTATTTCGGCTAATAAAGCGTCCAAGGCATTCGGCATACCTTCTAGCACATTGTATAAGATCGCGAGGAGGGAAGGCATCAGACTGGCCGCACCGTTCAATGCAAGTCCCACGACGTGGACGCCCGCCGATCTGGATCGCGCTTTGGAAGCGATAAGATCTGGCCAAACGTCCGTTCAGAGAGCGTCGACAGAATTCGGCATACCCACGGGGACATTGTACGGAAGATGTAAGCGGGAAGGAATCGAACTTAGCAGGAGCAATCCCACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCTGTCAGATTAGGGCACATGAGCATCAATCAAGCAGCGATCCATTACAATCTGCCGTATTCGTCATTGTACGGGCGTTTCAAGAGAGGCAAATACGAAGAACCCGTCGTCGGCGACATTTCGCAGGATGGCAGCAGTCCACACTTTCATCAGAGTCCCAATCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MARGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRATDPRHYERYKEEEAITINDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFNIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01520386;
- 80% Identity
- iTF_00730167;