Basic Information

Insect: Formica selysi
Gene Symbol: Dis3
Assembly: GCA_009859135.1
Location: CM020812.1:3139759-3144836[-]

Transcription Factor Domain

TF Family: CSD
Domain: CSD domain
PFAM: PF00313
TF Group: Beta-Scaffold Factors
Description: In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.0012 19 6.2 0.0 12 34 267 290 263 302 0.85

2 3 0.001 17 6.4 0.1 18 50 310 343 307 349 0.87

3 3 1.5e-09 2.4e-05 25.1 0.0 3 72 368 436 367 438 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.0012	19	6.2	0.0	12	34	267	290	263	302	0.85
2	3	0.001	17	6.4	0.1	18	50	310	343	307	349	0.87
3	3	1.5e-09	2.4e-05	25.1	0.0	3	72	368	436	367	438	0.88

Sequence Information

Coding Sequence: ATGTTGACAACAaaggttttttttagaaagACGAAAGgaggaaatatatttaagacCGTCAGAGAACACTATCTCAGAGATGATATTTACTGCGGGTTTAAAGCATGTAAGAATTGTAAGGCAAGACTTCGAGACATGGTATTGGATGAGGAGGATACCGGTGTGAAATCTTCTTTAATTTCACTTCCATACGTTCTTATACTggatacaaatataattctagATCAAataGATATATTGGAAGAAGATGTTATCACCAATGTTATTATCCTGCAAACAGTGTTGGAAGAGATTCGACATAAAAGTTccaatgtatataaaaagttgaaaaacatcataaaagatcCAAAACGAAAATTTTTCGTGTTTATTAATGAACATCATCGGGAGACTTATATTGAAAGGGAACCAGGTGAAAAGATAAATGATCGTAATGACAGAGCGATACGAGTAGCAGTCAAATGGTACAACAATCATTTAAGCTCTGATGATTACAATATAAAGGTTGTTTTGCTGACAGATGATGTGGAAAATAGAACACGTGCAGCTGAAGATGGCTTATTTGTTCTATCAAtGGAAGATTATATTGCATCATTGGAAAATTCAAGTTTGTTATTGGATAAATTAAGCAAACATTCCTACACTTCAGATACTCAAAGCCGGGAGTTGTTTTCCTGCCATCTAACACCTGTAGAAGTGCATGATGGTGTATCATCTGGCAAACTGTTGCAAGGAACATTTTTGGCATCAAgggaaaattttctcgaagGAAATGTAAATGTTGAAGGAAGGGAGAAACCTATATTTGTGCAAGGCCGTACTAATCTTAACAGGGCAGTCGATGGCGATATAGTCGCGGTTGAGATCCTACCAGACGATCAATGGTTAGCTCCTAGTGAAATCGTTCTGCAAGATGAAGAAAATGCAGATGATGCTGATGATGCTTCAGAAGATGAAAAAGTGCTCACTAAAGCGAGTTCActgaaaacaaaagaaaaagtaCCAACAGGTAAAATCGTCGGTATTATTAGGCGGAAGTGGAGACAATATTGTGGAATATTACAGCCGAGTCCGATTAAAGGAAACCTAAGACATCTATTTGTGCCAGCTGAGAGGAAGATCCCCAAAATAAGAATCGAAACTCGGCAAGCTGAAATATTGAGTAAACAAAGAATTATTGTCGCACTCGATTCATGGCCGCGAAACTCGAAATATCCACTCGGCCACTTTGTACGAGCGCTCGGCAATATAGGAGACAAAGAAACAGAGAATGAGGTGTTACTTCTGGAACACGATGTTCCACACAGCCATTTCTCCGATGCTGTTCTCAGCTTTCTCCCAAAGCTACCGTGGGTCATTACAGAAAcggATATCGCACAAAGAGAAGATCTTCGACATCTGGATATCTGTTCTGTAGACCCACCAGGCTGCACTGATATCGATGATGCATTACATTGCAGAAGTTTACCAAATGGTAATTTTGATGTTGGCGTGCATATCGCTGATGTATCGCACTTTATAAGACCTGGAACTGCATTGGACAAGGAAGCAGCGTCACGTGCTACTACCGTATATCTTGTCGATAAACGAATTGATATGGTGCcagaaTTACTTAGCTCAAACCTTTGTTCTTTACGAGGTAAGGAAGAAAGATTTGCGTTCTCTTGTATGTGGGAGATTGATTCTGATGCAAACATAATCAATACAAGATTCTGcaaatctataatttgttCGCGTCAAGCTATGACGTATGAAGAAGctcaattaaaaattgatgatGCCACTCAGCAAGATGCTATCGCACAATCATTAAGAAGATTAAATCAATTAGCCAAACAGTTCAAGAAGAAACGTCTAGAGAACGGtgCCTTAACTTTAGCATCACCAGAGATACGTTTCCAAGTAGACAGTGAAACTCATGATCCCATTGACGTGGAAGCAAAGAAACTGAGAGAAACTAATTCTATGGTAGAAGAATTTATGTTGCTTGCAAACATTAGTGTCGCTGAAACAATATTGAAAGAATTTCCAGAATGTGCTATGTTAAGAAGACATCCTGAACCACCACAAAGTAATTTTGAGCCATTGATTAAGGCTGCAAAAAATCAGggtttcattattaatacaaatactGGTAAAGAGTTGGCACAATCATTAGAAGAAAGTAAAATGGAATCAAATCCTTATTTTAACACAATGCTAAAAATACTAGCTACACGATGTATGTTGCAAGCAGTATATTTTATCAGTGGAATGCATCAACCGGAAGACTTTAAGCATTATGGATTGGCATGCCCCATTTATACGCATTTTACATCTCCCATTCGAAGATATGCGGATATAATCGTGCATCGATTGTTGGCTGTATGTATAGGCGCCGATGCGACTTATCCAGAGttattagataaaaagaaCAACCATCTGCTGTGCCAAAATCTAAATTATCGGAATCGAATGGCACAATACGCTGGTCGAGCTTCAGTCGCACTTCACACACATCTATTTTTCCGCGATAAAGTTCAGGATGAGGAAggatatattctttttgtacGAAAAAATGCTTTGCATGTTCTTATACCAAAATACGGTTTAGAAGGAATGTTGTATCTAAATAATCCTGCTTCATCAAATTCTATTACGTTTACGTACAATTCGGAAGATCAATCCCAAACTTGTGGAAATGTCGTATTTCGAGCATTTGATCGTATTATTGTGCAAATGAGTTTAGACAGATCTAATGTCCagcatgaaaaattaatttttaaactcGTAAAGCCAGaaATTCCAGATTTCAGTGTTCCTCCACTAAATAGAGAAGTTGTCAATATCACCGAAGAAGATTCTATGAAGGAAACATTAAAACGGAAAGCGGGAGTTCAACAAGAATCAACCAATATTCAGAACAAAAAAgctggaaaaaagaaaaagaaaaagaagaattaa
Protein Sequence: MLTTKVFFRKTKGGNIFKTVREHYLRDDIYCGFKACKNCKARLRDMVLDEEDTGVKSSLISLPYVLILDTNIILDQIDILEEDVITNVIILQTVLEEIRHKSSNVYKKLKNIIKDPKRKFFVFINEHHRETYIEREPGEKINDRNDRAIRVAVKWYNNHLSSDDYNIKVVLLTDDVENRTRAAEDGLFVLSMEDYIASLENSSLLLDKLSKHSYTSDTQSRELFSCHLTPVEVHDGVSSGKLLQGTFLASRENFLEGNVNVEGREKPIFVQGRTNLNRAVDGDIVAVEILPDDQWLAPSEIVLQDEENADDADDASEDEKVLTKASSLKTKEKVPTGKIVGIIRRKWRQYCGILQPSPIKGNLRHLFVPAERKIPKIRIETRQAEILSKQRIIVALDSWPRNSKYPLGHFVRALGNIGDKETENEVLLLEHDVPHSHFSDAVLSFLPKLPWVITETDIAQREDLRHLDICSVDPPGCTDIDDALHCRSLPNGNFDVGVHIADVSHFIRPGTALDKEAASRATTVYLVDKRIDMVPELLSSNLCSLRGKEERFAFSCMWEIDSDANIINTRFCKSIICSRQAMTYEEAQLKIDDATQQDAIAQSLRRLNQLAKQFKKKRLENGALTLASPEIRFQVDSETHDPIDVEAKKLRETNSMVEEFMLLANISVAETILKEFPECAMLRRHPEPPQSNFEPLIKAAKNQGFIINTNTGKELAQSLEESKMESNPYFNTMLKILATRCMLQAVYFISGMHQPEDFKHYGLACPIYTHFTSPIRRYADIIVHRLLAVCIGADATYPELLDKKNNHLLCQNLNYRNRMAQYAGRASVALHTHLFFRDKVQDEEGYILFVRKNALHVLIPKYGLEGMLYLNNPASSNSITFTYNSEDQSQTCGNVVFRAFDRIIVQMSLDRSNVQHEKLIFKLVKPEIPDFSVPPLNREVVNITEEDSMKETLKRKAGVQQESTNIQNKKAGKKKKKKKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01098967;
90% Identity: iTF_00867163;
80% Identity: -