Basic Information

Insect: Formica exsecta
Gene Symbol: salm
Assembly: GCA_003651465.1
Location: NW:3328459-3443857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-05 0.0011 18.6 1.0 1 23 381 403 381 403 0.98

2 9 6.9e-06 0.00046 19.8 2.1 1 23 409 431 409 431 0.98

3 9 3.1 2.1e+02 2.0 3.3 3 23 797 817 796 817 0.92

4 9 3e-08 2e-06 27.3 0.6 1 23 823 845 823 845 0.97

5 9 4.2e-05 0.0028 17.4 2.6 1 23 855 877 855 877 0.98

6 9 0.0086 0.58 10.1 3.2 2 23 1182 1203 1181 1203 0.97

7 9 0.021 1.4 8.8 1.0 1 14 1209 1222 1209 1223 0.92

8 9 4e-07 2.7e-05 23.7 2.1 3 23 1425 1445 1423 1445 0.96

9 9 1.4e-07 9.3e-06 25.2 0.9 1 23 1451 1473 1451 1473 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-05	0.0011	18.6	1.0	1	23	381	403	381	403	0.98
2	9	6.9e-06	0.00046	19.8	2.1	1	23	409	431	409	431	0.98
3	9	3.1	2.1e+02	2.0	3.3	3	23	797	817	796	817	0.92
4	9	3e-08	2e-06	27.3	0.6	1	23	823	845	823	845	0.97
5	9	4.2e-05	0.0028	17.4	2.6	1	23	855	877	855	877	0.98
6	9	0.0086	0.58	10.1	3.2	2	23	1182	1203	1181	1203	0.97
7	9	0.021	1.4	8.8	1.0	1	14	1209	1222	1209	1223	0.92
8	9	4e-07	2.7e-05	23.7	2.1	3	23	1425	1445	1423	1445	0.96
9	9	1.4e-07	9.3e-06	25.2	0.9	1	23	1451	1473	1451	1473	0.98

Sequence Information

Coding Sequence: ATGTCACGGAGAAAGCAGGCCCGACCGAGCCGTGCCCATCTTGAGGAGGATCTTGTCCAGGGGCCTCTGCTGATCAATCCCGTTGGAACTGTCACGAGCGTAATCCGTGAAGAAAATGACTTTATATCAGACGGTGAGGAGAGCGGCGGTGGAGCAGGAGGCGAGGAAGCCGTCGATCTTACCGCGGCGAGATCTCATCAGGGCGATGAGGACGACAAGGATGCCGATGATCCTCTGGGCGAGGACGAAGAGGACGGCGGTGACGAACAAGACGAGCAATACGAGGACGAGGAGGGTTCGCGAAAACAGATTCGCCATCGACAGGACGCGGAAAACAACAACAATTTTGTCGGGAGTGGCTCAACCTCCGCTGGAATATTTCCACCTGCTGGAACTAGTCATGTCACTCTCGAGGCCCTTCAAAATACAAAAGTTGCGGTCGCGCAATTCGCTGCCACCGCCCTCGCTGGTGGAGCCGATAGCGACGCGGCATTACAGGATCTGGCCTTCTTACAAAGTACGCTGTATAATCTTCAGCATCAACAGGTCCTCCAGTTACAGTTTATCAGCCAGCTTCAGCAACAATTATCGATCACTCAAAAGCAACCGGTAGCGCAACCGTCATCGATAGAGCCAACTGATAGCAAGGAGGCCTCGTCGTCTCCCATCATCCATCCGAAACCATTGTCGAGTCTCACATCACCACCTTCTTCTCGGCCACCGAGTAGTCACCATCACTCATCACCAGCGCCACTGACGCCGAATCTACTTCAAGAACGACCCACCTCGACGAGCAGTGCCTCTCCATTGAATCTACCCCTGTCTTCGTCCGGCACTACATCGACTACCGCTACGAGTACCAGCAGTCAAATCTCACTGTCGCATCAAATGCCGCCTCTTTGCTCGATCAGCTCTTCTCTCGCTTCGTCGATCATAACGAATAATGATCCACCGCCCCTTCACGAACCAAATACACTGGAGATGCTGCAAAAGCGTGCTCAAGAGGTTTTGGACAACGCGAGTCAAGGTCTATTGGCCAACAATTTGGCCGATGAGCTCGCATTTAGAGGCAGTAAAGGCTCACGGCTTTCGCCTTACGATTCGAAAACGAGCGGCGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGTGGCAAGGTCTTCGGCAGCGATTCAGCGCTACAGATCCACATACGATCCCATACAGGTGAGCGACCCTTTAAGTGCAACGTCTGCGGGAGCCGATTCACCACCAAGGGCAACCTGAAGGTCCACTTTCAGAGGCATACGGCCAAGTTTCCACACGTAAAGATGAATCCGAATCCCGTTCCAGAACATCTAGACAAATACCATCCGCCCCTCTTGCAGCAAATTGCTTCCGGGCAACGGCCAATATccccgccgccgccgcctcaCGCCATTCATCATCCCTCGTGTCATCCGGCACGTAGGGAGCATAGTTTCCTACCACCACAGCCGCCTTTACCTCTCAGTCTTACATCGCCCAGTATGATCCTCTGCCGTTTACCAGTTATTAATCACCGGGACGATCAGGATGTGCCGGAAAACCTTAGTAAACCCGTAACCGCTGCTCCGCCGATGTCCCCTACTTCCCCCGCCGCTGTATCGAACTCTCATCATTCCTTTCACGACAATCATCAACAACAACAAAAACAACAACTCGAGCAGAGAGAGGAGATAAAGCTCGAACAGAGATCACCCGGACAGGACCAGTACCAGCAACGACTAATGAGCCAGGAAGACGCCGGGCGCATAACTCCGAAGAGAGAACCCGAGGAGACGGAGGAACCTGTAGAAACGGAAGAAGGCGAGGACTTTGAGGAGACAACGAGGCGATCTCTCAACTCACCTTCATCCTTAGTGAATCCGTCGTTTCAGCCGCAAGCGTACGAGGATTGTAGTATGGACAGCAAGATCAGCGGACGGTTAGAGGGCGACGGCGAGATGGAAATAGACGAAGAGACAGAGGAGCAACCGGAGAACCTCTCTGGCAAGGGTACGATCAATCGTTTGCCTCAACAGATGATGGCATATCCTGGAGCGTCTCCAGCTAGTAGTAGCGCGAGTAGCGGTAGTCTTCAGACATCCTTCGCCGGGATTCTATTCCCGAGCGCTCCGGCTCATCATCAAATACCTTCTCATCTTCCGACGGTTTCCACCGCTGGGCAGACGCCGACTGTCTCCGCGAACGAGATGATCGATCCGGCTAAGGATCCAGCGATCTATTCGAGCTTGTTACCGCGACCGGGTAGCAACGATAATTCCTGGGAAagcttgattgaaataacgaAAACTTCCGAGACGTCTAAATTGCAGCAGCTAGTCGATAATATCGAGCACAAACTGAGCGATCCTAATCAGTGTATTGTTTGTCATAGAGTGCTCTCGTGCAAGAGCGCATTATTAATGCATTATCGCACTCACACGGGCGAGCGTCCGTTCAAGTGCAAGATCTGCGGTCGCGCGTTTACCACAAAGGGCAATTTAAAAACTCACATGGGAGTGCATAGGGCTAAGCCGCCGCTAAGAGTGTTGCACCAGTGTCCAGTGTGTCACAAGAAGTTCACGAACGCTCTCGTGCTTCAGCAGCACATACGCCTTCACACCGGCGAACCTACCGATCTTAGTCCAGAGCAGATTCAAGCCGCAGAAGTAAATGAGTTTCCGGGTTGTTATCCTCAACCTCAGCTTTCTTTCTTCCCGCAAGGATTTGCGCCGATTCATCCGACCGGTGCTGGCTTTACTTTAGGATTCCCTGGATCTAGGCAACCGACCATCGAGCAACAATCGCATGAAAATGACGTCGATTTGAAGGAGGAGTCTCAGCAACAACGGCAAAGATTTATGGAAGAGCATAGCGAGGAGATGGAAGATCAGGATGACGAGGAGCAAGATCGCAGAGAAGACGACGATAGATGCGAGGTGAATCGCGATAGACGTAGTGCTGAAATGATGGAGAAAGAGCAGGAGCACGAGAACGAGGAAACCGAGCACAGAGACATGATACTTCCCATGTTTTCAACTTCGCTGGCGGCCCTCGAGAACCAAGTAAAGACCATCACGACGACGATCGCCACGACCACGATCGCGAATGTAGCCAGATCGCCGCCGTCCTTTCATCGATATAATGGTAGCGAAAAGAGCGACAGTTCGCCAATTTCCGGTGCCCCGCTCGATCTGACACCTCGCGCTTCGTCCACTCCGGCGTCGGTAGCTTCCGCGTCGCCGAcaccgccgccgctgccgccaCCGTCCCAGACTGTACCGTCGCACCATCCGTCGCATCCCTTCAGTATGTTTACTGGATTGCTGCAAGCAGTCTCGTCCGCACCCGTCACCAGCACGCCAGGCACGTCCAACATAAATAGCATCACGTCGATGAGCGCAATCAACCCGGGAAGCGCTCCCGGCAGCGGACCCTTAGCCTCGCTAACCACCTCAGCTGTACTAGCCGCGTCATCGACTTACAATCCGCTCGGTCTAGCTGTCGGAGGGCCAGCAGTACGTGGCAACACCACTTGTAAATTCTGCTACAAGACGTTCGCGTGCCAATCCGCATTGGAGATACATTATCGGAGTCATACGAAGGAACGACCTTTCAAATGCACTATATGCGACCGAGGTTTTTCCACAAAGAACGACGATTCCGGTCAGCAAGCATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCCCCCACAACCCAATCCCCAATACCACTCGTACCCGGCGAGATCGGCCGCCGGAAATCGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAGCGGAAGAACCGGGGGCGGACAGGAGCAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCACATGTTGACTCATAAGATTCGTGATATGCCGCCGCACCTATTCAGCGATGCAAAGccacaacagcagcagcaacagcagcagcagcagcagcagcagcagcagccgcTATGTCAGGATCACGAAACTTCCAAGAGCCCGATGTGCACCGATGATTCGAGCCTACCGCCCCCGCCTCCACCGCCACCACCACCCCCACCGATGCCACCTACGTCAATCGAGTCCGCGATACCAATAAAGAGATCTCCGCCGGAAGGAGATTTGCCGGCGCCAAAGAGACCAGCCAACATGCCGAGCAAGCACTTGTGCCAGATTTGCAATAAGAATTTCTCCTCGTCTTCGGCGCTCCAGATCCATATGAGAACCCACACTGGCGACAAACCGTTCCGATGCACCGTCTGCCAGAAGGCGTTCACCACCAAAGGCAATCTTAAGGTGCATATGGGCACTCATATGTTCACCAACGGAACATCACGTCGAGGACGACGAATGTCATTGGATCTACCTCCTCTGCCAATCACACCCAAGGACTCGGAGTTTCTGCAACGACGGCCGGACCTTTTTTACCCATATCTTCCCGCACCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATCTCGGTGATTCAAAGTAACAACGGATTACCGCCTCATTCTTTGGGCGCGGGCAAATACGCGGCGAGTCTGTTCGGCTCGGTGTACGGGGCCGGCGGGGGCGGTTTTCCCTTGGATAAGCAGCCGATGGCGCCAACCAGTAACGGACCCCTGATGGATGGCAAACCCGCTGTTCCATCGGGCTCTATGCTCTTCCAAACGCCGTCGCCCACGCACTCACCCGGCGCGCCATCATCCAATGGCGGTAATCAAAACTCAATTAACGTGCCGTCCTGGACTGGTGACGCTCTTCAGCATCATTTCGACCGAGAGACACCGAGCAGAACCGAGAACGACGCCACGCCACCCACCGCCGCCCGTCTACCACCGCCACCGACGAGGGGAGAAGGATTAGCCGCGTGA
Protein Sequence: MSRRKQARPSRAHLEEDLVQGPLLINPVGTVTSVIREENDFISDGEESGGGAGGEEAVDLTAARSHQGDEDDKDADDPLGEDEEDGGDEQDEQYEDEEGSRKQIRHRQDAENNNNFVGSGSTSAGIFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSDAALQDLAFLQSTLYNLQHQQVLQLQFISQLQQQLSITQKQPVAQPSSIEPTDSKEASSSPIIHPKPLSSLTSPPSSRPPSSHHHSSPAPLTPNLLQERPTSTSSASPLNLPLSSSGTTSTTATSTSSQISLSHQMPPLCSISSSLASSIITNNDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGSKGSRLSPYDSKTSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPISPPPPPHAIHHPSCHPARREHSFLPPQPPLPLSLTSPSMILCRLPVINHRDDQDVPENLSKPVTAAPPMSPTSPAAVSNSHHSFHDNHQQQQKQQLEQREEIKLEQRSPGQDQYQQRLMSQEDAGRITPKREPEETEEPVETEEGEDFEETTRRSLNSPSSLVNPSFQPQAYEDCSMDSKISGRLEGDGEMEIDEETEEQPENLSGKGTINRLPQQMMAYPGASPASSSASSGSLQTSFAGILFPSAPAHHQIPSHLPTVSTAGQTPTVSANEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPGCYPQPQLSFFPQGFAPIHPTGAGFTLGFPGSRQPTIEQQSHENDVDLKEESQQQRQRFMEEHSEEMEDQDDEEQDRREDDDRCEVNRDRRSAEMMEKEQEHENEETEHRDMILPMFSTSLAALENQVKTITTTIATTTIANVARSPPSFHRYNGSEKSDSSPISGAPLDLTPRASSTPASVASASPTPPPLPPPSQTVPSHHPSHPFSMFTGLLQAVSSAPVTSTPGTSNINSITSMSAINPGSAPGSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKNDDSGQQACSCADQPFAAKGPIPPQPNPQYHSYPARSAAGNREKPKRRRRRPEERKNRGRTGAGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFSDAKPQQQQQQQQQQQQQQQPLCQDHETSKSPMCTDDSSLPPPPPPPPPPPPMPPTSIESAIPIKRSPPEGDLPAPKRPANMPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPPHSLGAGKYAASLFGSVYGAGGGGFPLDKQPMAPTSNGPLMDGKPAVPSGSMLFQTPSPTHSPGAPSSNGGNQNSINVPSWTGDALQHHFDRETPSRTENDATPPTAARLPPPPTRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_00869103;
80% Identity: -