Fexs004690.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica exsecta
Gene Symbol
-
Assembly
GCA_003651465.1
Location
NW:290274-370853[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 1.3 86 3.3 4.7 2 23 341 362 340 362 0.96
2 38 0.00016 0.011 15.5 1.5 1 23 364 387 364 387 0.96
3 38 0.0015 0.1 12.5 1.5 1 23 392 415 392 415 0.97
4 38 9e-05 0.0061 16.3 1.5 1 23 421 444 421 444 0.95
5 38 0.0018 0.12 12.2 2.0 2 23 451 473 450 473 0.95
6 38 0.0026 0.17 11.7 0.2 1 23 478 500 478 500 0.97
7 38 0.001 0.07 13.0 0.5 3 23 508 527 507 527 0.98
8 38 9.4e-06 0.00064 19.4 0.1 1 23 533 555 533 555 0.97
9 38 0.0015 0.099 12.5 0.4 1 23 561 583 561 583 0.97
10 38 4.3e-05 0.0029 17.3 0.4 2 23 682 703 681 703 0.95
11 38 0.049 3.3 7.7 4.0 1 23 705 728 705 728 0.97
12 38 0.12 8 6.5 3.5 1 23 733 756 733 756 0.95
13 38 1.8e-05 0.0012 18.5 2.5 1 23 762 785 762 785 0.97
14 38 0.025 1.7 8.6 0.8 3 23 793 814 791 814 0.95
15 38 0.00026 0.017 14.9 0.2 1 23 819 841 819 841 0.97
16 38 8.9e-06 0.0006 19.5 0.1 2 23 848 869 847 869 0.97
17 38 6.8e-06 0.00045 19.9 0.1 1 23 875 897 875 897 0.98
18 38 0.00085 0.057 13.3 0.8 1 23 903 925 903 925 0.97
19 38 0.023 1.5 8.8 6.0 1 23 961 984 961 984 0.96
20 38 1.5e-05 0.001 18.8 0.4 1 23 990 1012 990 1012 0.97
21 38 0.003 0.2 11.5 3.5 1 23 1018 1040 1018 1040 0.97
22 38 0.00049 0.033 14.0 2.6 1 23 1046 1068 1046 1068 0.98
23 38 3.1 2.1e+02 2.1 9.4 1 23 1074 1096 1074 1097 0.96
24 38 9.6e-05 0.0065 16.2 3.9 1 23 1113 1136 1113 1136 0.96
25 38 0.53 35 4.5 1.0 3 23 1148 1168 1146 1168 0.95
26 38 8.4e-07 5.7e-05 22.7 1.2 1 23 1174 1196 1174 1196 0.98
27 38 2.1e-06 0.00014 21.5 1.6 1 23 1202 1224 1202 1224 0.97
28 38 1e-07 7e-06 25.6 0.7 1 23 1230 1252 1230 1252 0.99
29 38 0.61 41 4.3 0.6 3 23 1286 1307 1285 1307 0.96
30 38 7.9e-05 0.0053 16.5 0.8 1 23 1313 1336 1313 1336 0.97
31 38 0.04 2.7 8.0 0.4 2 23 1342 1363 1341 1364 0.94
32 38 9.9e-05 0.0067 16.2 0.4 1 23 1369 1391 1369 1391 0.98
33 38 0.056 3.8 7.5 0.9 2 23 1398 1419 1397 1420 0.94
34 38 3.1e-05 0.0021 17.8 2.8 1 23 1441 1464 1441 1464 0.96
35 38 0.00092 0.062 13.2 0.6 1 23 1475 1497 1475 1497 0.96
36 38 0.011 0.74 9.8 3.2 1 23 1503 1525 1503 1525 0.94
37 38 6.6e-07 4.4e-05 23.0 1.7 1 23 1531 1553 1531 1553 0.98
38 38 0.00056 0.038 13.8 0.2 1 21 1559 1579 1559 1580 0.95

Sequence Information

Coding Sequence
ATGTCCTCCCTTGATTATCTGGACTTGTGTCGGCTGTGTCTCGTGAAGGACCGCGTCTCCGTGCCGATTTTCGAAGGCGAGGGCGACGTACGGCAGATCTTTCTAAAGATCACCGCCTGTTTGCCGGTCAAGGTTGCCCGAGAAGACAAATTACCCAAGAAGATATGTGACGACTGTGTTTATAAAgtagaattaatttatcaattttggcATACGACAGCGAACGCAGAAAAACAGTTACTACAATGGCTAGGCGAGGTAAACATGGAAGACAAACAGGGTTACGTTGGCACTGTTCTCAATCCGAATGGAATGAAACCAGAACAGAGCAACGAGAACAGGTTAGATGGTACTGTGATGCAACAAGTAAGCGAACATCAGAACAATATGACTATGGGTATGATGGACAATATGGGCTTGACTATGCCTATGATGATGTCGAGCAGTACCCAACAACAAATAACCTCAGTTCCTATAGACAACAGTGGTAGCTCCGTACAAAATGTCCAACCAGTAGCTGGACCAAGTACACAAACGTCGCATGACCAAATTACGCAGGATCAAACAAATGCATCCACACagcaagaagaagaagaggagagtagtgaagaagaagaaaactcGGATGATGAATGCGATGGAGATGAAGGCCTACctataaaagaagaaagtgAAGAAGATCCTAATAGAACTATTGAGCCTACAACATTTGTCAATGTCTCTTTAGCGTGCGACGAAGCAGGTCCTTCCGGACTTCAACAACAAAAGATTGCTGATATACCCGAGATGGTAATGTCACAGACATCAGACGTGGATCCGAAAACTGGAGCGGCAGATCCGTTAAACGTTGAATCCATTGTCACCCGAAAACAATTCGAATGCGAacgaatgaaaagaaaaaagcctTTAATAGAAGACGAAGAGCGAATACAAGGGATAAACGTAAACTTGACGAGAGAATCTAGTCCGCGAATTGTAACCGAAGAGAATCGGCCGGCCAGAAATAAGACGACGTGTGTAGAATGCGATCACTGTTGCCGCAAATTCTTGAAGAAGAGCAATCTCGCCGAGCACTTGAAACAGCACAGACACAAGTGCGCCGATTGCCCGAAGACCTTTAGTCTTCGGCGTTATTTGGTCTCTCATATCGAGAGGAATCATCGACAGCAGATGTACGAATGCAGCGTGTGCAAATACAAGAGCAATAACAAGGGCACTCTGAAAAATCACTACATCCGACTGCACACGAGCAACTACGATTACGCGTGCGACATTTGCGGCAAGCAATTCAAGATCAAGAAAGCTCTAAATCATCACGTGAAGCAGAATCACAGCGAAGCACCGCCAATCGTGTGCGACGTTTGCGGCCATTTCAGCAAGAATCTCCACGCTCTCAAAGCCCATATGAAGTACAGACACTATAAACCGGAATTTGTTTGCCGGATATGTCGACGGGGCATGACTACACAGGAGAACTTGGAGCAGCATCTCATGTGGCACGAAACCAGGGAGAAGGTGCTCTGTCCGACCTGCGGCAAAAGATTCCGAGGTCGTGATCTTGATTCGCACATGAGGGTGCATACCGGAGTAAAGCCGTTCCCCTGTCCTGTTTGTGGAAAGACATTTCGACGACAAACAGCACAAGAGCAACATGTATTGATTCACACCGGGAAGAGACCCTATATTTGCGATATTTGCGGTCAAGCGTTTGCCCAAAAACCTGGTCTCATCTGCCATAGGAAGAGACATCCTGGTCCGCTACCTCCGCTGCCTGTAGTCTCTATTAAGAACATTGTCACGGAATTTACAAAAGACGATTCAACCATGGACCCTCTGAACGTCGTGGACATCAATAATTCGGAACACTTGCTGGTCGAAAGCATAGAGTGCACGCCAGAGTATGACTCGCTACCAAATAAGCTCAAACGACATATTactagaaaaagaaagatgccGAAACAGGAGAATTATTCTACGGGAAAAGATACGAAAAAGCAATATCACGATCAGAACAAAGTCAAAAGGAAACCCGAGCTCTTCTTGGAATGTGCCACATGTGGCAAACGTTTCAGCGACAAACCTACTATGATAAAACATATGAGCCAGCACAAGTACCAGTGCCAAACCTGTTGCCAGAGTTTTAGTCTGAAGCGAGACATGAAGCGTCACATCGAAAAGGTTCATGGACCTCTACTCTATCCCTGCAGCATTTGCGAATATAAGAGCAACAATAAATGCACCTTAAAGGATCACTTCATACGGAAGCACACCAGCAGCTTCCAGTATACCTGCAAGGATTGCAAGAAGCAGTTCAAGATCAAGAACGATTTGAAGCAACATATGAATCAAGTGCATAGTGGCGCACCGCCTATCATTTGTAGTATCTGCGGACACGCATGTAAAAACGTGCCTGCCATTAAGGCACACATGAAATATCGACATTACAAGCCAGCTTACGAATGCAAGATATGTAAACGCGGTCTGACCACGCAAGAGAATCTGGACCAGCATCTAATCTGGCACGAACGGAAGGAGAAGGTCGTCTGTCCTACTTGCGGCAAGACTTTCGGCCAAAAGAGGGACTTGGACCTTCATTTGAGGATCCATCAAGGTATCCGGCCATTTTCCTGTCCAGTCTGCGGCAAGACTTTTCCTAGAAAGACCGCGCAAGAGCAACACATATTGATTCACACCGGCAAGAGACCGTATATTTGCGACATCTGCGGCCAAACTTTTGCACAGAAGCCAGGACTCATTTGCCACAGGAAACGTCATCCTGGACCACTGCCGCCGTTACCTGTagtatctattaaaaaaataatcATACCTCTCATTACCCTCCGTTATTTCAGGCAACGAAGGGGTAAATCGCGCGCCGTGCATCAATGCGTCAAGTGCGGAGCTTGCTTTCGCCATACGCGAAAACTCGTGGAACATCTGAAGAATCTACACAATATCGATCGGGCTTTCAGCTGTGACGAATGCGACAAGACGTTCCGCAGCCCGATGAACATAGCTCGCCACAAACTGATCCATACCGGGTTGAAGATGTTCATCTGCGATCTCTGTGACTATAGCACTAATCAAAAGTCCAATCTGGAATGCCATCGTCGCCGACACGCGAAGGATTATAGTTTCAAATGCGAGATGTGCGACAAGGGTTTCTTTCACAAGACCGAGTATCTGGAGCACCAAAACGCGCATACAAATAAGAATCTATATCGCTGCGAGCACTGTTGCAAGTACTACTTCTACAAGAAGAATCTGTCGGTGCATCTGGTAACGCATCACACGGACAAACAAACCGGCGTTCTCGCGAAGAACGCAAAGACGAGGCACGTGTGCAAATTCTGTCCGGAAAGATTCGTCTACAAGAAACTGCTGAAGAGACACATGAAGAATCAGCACGGATTCACGGAACACGCTCCGACGAAACACCTGTGCGATCTGTGCGGCGCGGAATTGTCGTCGATGAGACGATTAACGGTGCACAAACGTAATCATGTGGGCGAGAAGATCTTCGAATGCGATACGTGCGACAAGAGATTTGCTAGCAAGGAGAATCTGAGTATCCACAAACGAACGCACACAGGTGACAAACCGCACGTGTGTCCGCAGTGCGGTAGAAGTTTCACGCAGAGGACCTCGTTGGTCTTACATCTACGATATCATTCGGGTCAGAGGCCTTATCAGTGTCCGGATTGCAGCAAGAGTTTCGTGTCCAACGCTTTGCTCAAGAGGCATCGCAAAGTGCACGAGAAAACCGTGCACCCATGGACGAATAATCACGATTTGAAAGTGAAGAATGGGGACCTGCCTGATCTTGGACAGAAATTCGAAGGTAGCGAGAAAATTTGCGAGCTGTGTCGAGAGAAATTTCACTTTGTTACGAGATTAGTCGCTCATCTGAGAATAGCGCACGGCATTCATCGACCCTTCAAATGCGTCACTTGTGGCAAGAATTATCCCCAGCAATTCATGCTTAACGCCCACGTGAAGAAATCGCACACTCTCAAAACGGTGCCGTGCAACGAGTGCAATTTCATGGGTGTCGACGCGACCGACGTGGAGAGGCACAGGAAACGACATCATCGAGCCTCGAAATTCACGTGCGAAATTTGCAGCGAGAATTTCATCGACAAGGACACTCTGATCACGCACACGACGATGCACAACTTTATGCAATATCAGCAATGCAGCGCGTGTGGTAGCATCTTTAATGACGTGTACAGcTTGAAGGAGCATAATCGTCTACACCACTACGATCCTGCGGTCATGTCGGATGAAAGGATCGAGGAATCTATGGAGAACGGATCCGAACACAAATGTGACGTTTGTGACAAGGTCTACAAGTACAAGTCGATGCTGAAGCAGCACAAGATCAAGGCCCATGGGAATCCGTCTCTCTACGAGAGACGTAGGTATCTTTGCGCACAATGCGGCAAGGAGTTGAAGACCGCGAAGGGTCTCGAAATTCATCATAGATCGCACACCGGCGAAAAGCCGTACACTTGCGAAGTGTGCGGTAAATGTTTCGCTTGCGAGACCCTGCTGAGGACCCACAAGGTCATTCATACCGGAGAACGGAAGTACTCGTGCGATCAATGCGGCAAGTCTTTCACGCAGAGGTCCACGTTGGTTGTTCACAAACGATATCACACGGGCGAACGACCGTACATTTGTCCTCGATGCAATAAGGGTTTCATCACACGAACTGTTCTTAATACTCATATTAAGTCTTGTCGTTAG
Protein Sequence
MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKITACLPVKVAREDKLPKKICDDCVYKVELIYQFWHTTANAEKQLLQWLGEVNMEDKQGYVGTVLNPNGMKPEQSNENRLDGTVMQQVSEHQNNMTMGMMDNMGLTMPMMMSSSTQQQITSVPIDNSGSSVQNVQPVAGPSTQTSHDQITQDQTNASTQQEEEEESSEEEENSDDECDGDEGLPIKEESEEDPNRTIEPTTFVNVSLACDEAGPSGLQQQKIADIPEMVMSQTSDVDPKTGAADPLNVESIVTRKQFECERMKRKKPLIEDEERIQGINVNLTRESSPRIVTEENRPARNKTTCVECDHCCRKFLKKSNLAEHLKQHRHKCADCPKTFSLRRYLVSHIERNHRQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDICGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKDDSTMDPLNVVDINNSEHLLVESIECTPEYDSLPNKLKRHITRKRKMPKQENYSTGKDTKKQYHDQNKVKRKPELFLECATCGKRFSDKPTMIKHMSQHKYQCQTCCQSFSLKRDMKRHIEKVHGPLLYPCSICEYKSNNKCTLKDHFIRKHTSSFQYTCKDCKKQFKIKNDLKQHMNQVHSGAPPIICSICGHACKNVPAIKAHMKYRHYKPAYECKICKRGLTTQENLDQHLIWHERKEKVVCPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKRPYICDICGQTFAQKPGLICHRKRHPGPLPPLPVVSIKKIIIPLITLRYFRQRRGKSRAVHQCVKCGACFRHTRKLVEHLKNLHNIDRAFSCDECDKTFRSPMNIARHKLIHTGLKMFICDLCDYSTNQKSNLECHRRRHAKDYSFKCEMCDKGFFHKTEYLEHQNAHTNKNLYRCEHCCKYYFYKKNLSVHLVTHHTDKQTGVLAKNAKTRHVCKFCPERFVYKKLLKRHMKNQHGFTEHAPTKHLCDLCGAELSSMRRLTVHKRNHVGEKIFECDTCDKRFASKENLSIHKRTHTGDKPHVCPQCGRSFTQRTSLVLHLRYHSGQRPYQCPDCSKSFVSNALLKRHRKVHEKTVHPWTNNHDLKVKNGDLPDLGQKFEGSEKICELCREKFHFVTRLVAHLRIAHGIHRPFKCVTCGKNYPQQFMLNAHVKKSHTLKTVPCNECNFMGVDATDVERHRKRHHRASKFTCEICSENFIDKDTLITHTTMHNFMQYQQCSACGSIFNDVYSLKEHNRLHHYDPAVMSDERIEESMENGSEHKCDVCDKVYKYKSMLKQHKIKAHGNPSLYERRRYLCAQCGKELKTAKGLEIHHRSHTGEKPYTCEVCGKCFACETLLRTHKVIHTGERKYSCDQCGKSFTQRSTLVVHKRYHTGERPYICPRCNKGFITRTVLNTHIKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01523537;
90% Identity
-
80% Identity
-