Fexs006066.1
Basic Information
- Insect
- Formica exsecta
- Gene Symbol
- bab1
- Assembly
- GCA_003651465.1
- Location
- NW:253384-706436[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-17 1.7e-14 52.6 0.0 1 43 379 422 379 424 0.95 2 2 6.5 7.2e+03 -3.9 2.3 6 15 502 511 500 512 0.88
Sequence Information
- Coding Sequence
- ATGACGCAGCAAAGCGGTGCTGGGTCACCCCAGCAATTTTGTTTGCGCTGGAACAACTATCAGACTAACCTAACCAACGTCTTCGATCAGCTCTTACAGAGCGAAAGCTTTGTGGACGTGACCTTAGCCTGCGACGGTCACAGCGTCAAGGCTCACAAGATGGTCTTGTCAGCCTGCAGCCCATACTTTCAAGCACTCTTCTTCGACAATCCCTGCCAACACCCGATCGTCATCATGAAGGACATCAAATGGCCAGAACTCAAGGCTGCGGTCGAGTTCATGTACAAGGGCGAGATCAACGTCTCCCAGGAACAGATCGGGCCGCTGCTCAAGGTCGCGGAGAGTCTCAAGATTCGCGGCCTCGCGGACGTCAATAGCGAACAGGAACTAACGTCCAGACCGACTCTGGAGGAGGTCGCGACCGCGGCGATGCAGCGAAAGAAACGCCGCCGAATGTCCGGCGAGCGTTCCCCGTCCAGCAACAGTCCGGAACGCATCGGTTCCGGCAGCATTGCCGACGACCAGGACGTGATCGCCGGCAACATTGTCGTACCCGAGATCCATAATATGGTGCCGCCGACCGCCAGCTCGACACCTAGGTCCCTAGGCTCGCCTAGTACGCCCAGTATGCCTAGCATCTCCGTCACGCCGCAGATCAACCTGCAGGAGCTTCCTGTCTCGCTGCCCTTACCACCACccccgccgccgccgccgcagGGACAGCAGAGTTCGCACCCCCTGTCGACCCACCACGTGTCCGGCCACGTGACTTCCGGTCCGCACGCGCCCGTCAACCACCTGGGCAGCCACGGTCAGCAACTCAGCgtgcaacagcagcagcaacagcagcagcaacaacagcaacagcagcagcaacatgCGCTGAACGCCGGCGGTCAGGCTGTCAGCGCCGACGATCTCGAGATCAAGCCCGGCATCGCGGAGATGATTCGGGAGGAGGAAAGGGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGCGCCTCCACCTCCAGTATAGCAGCAGACAGCTACCAGTACCAGCTCCAATCCATGTGGCAAAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAATCTGCGCTTCCGGGAACGCGGACCCCTCAAGTCCTGGCGGCCGGAGACCATGGCGGAGGCGATCTTCAGCGTCCTCAAGGAAGGGCTTTCCCTCAGCCAAGCGGCAAGAAAATACGACATCCCCTATCCGACGTTCGTCCTGTACGCGAATCGAGTGCACAACATGCTGGGTCCTAGCGCCGACGGCGGGGCCGATTTGCGTCCGAAGGGAAGAGGAAGACCGCAGAGGATTCTGCTGGGCGTCTGGCCGGACGAGCACATCCGCGGTGTGATTCGCGCGGTGGTATTCCGTGACGGGCACTCGCCCCATATCGTCAAAGAGGAGCCGACCACGATATACCCTACCCTGGCGAATTACGCGGCCTGCAATGGTCCGGAAGGCGCGGTCAGCCCGGGTGCGGCGGCCGCGGCCGCGGTCGCGGCGGTCGCTCAAGGTCTGCGACATCAGATGTGCAGTATGGTGGCAGCAGCGCACTCGCAGCAACACGACATGATGGCGACCAATTTGTCGACGAATTTGTCGACAAGCTTGTCCTCCAGTCTGTCGTCAAACTTACAGGCAGCGATGCAAGCTAGCCAGCAccacaataacaataatacaagTGGCAGTAACGCGGGCCTCGGCGGCAATAGCGCCGGTGTCGGCAACAACGGCAATTCCCCATTGAACCTCGGTCTAGCGAGCCCGGGCTCGGGCGGCCCGCCCGAGAGCCCGATGGAGAGTCCCCTGGCAAGTCCGTTGGGTCCGCTGATGGATCCGGCGGGTCACATACCCAGCAGCGTGGAAGTCGGCATCGGCGTGAGCGGCATGACGTACAAGCCGGCGCGAAGCTTCGTCAGTCCGCGCCCGGAGAATCTCTTCCAAGAGGACATCGCCGATCTGGTGAAGAGTCCCCACGGTCTCAAGGACAAGGACAAGATCCCGGTGAAGCTCGAGCCGCTCACGGACTCGCGCTGTGAATAG
- Protein Sequence
- MTQQSGAGSPQQFCLRWNNYQTNLTNVFDQLLQSESFVDVTLACDGHSVKAHKMVLSACSPYFQALFFDNPCQHPIVIMKDIKWPELKAAVEFMYKGEINVSQEQIGPLLKVAESLKIRGLADVNSEQELTSRPTLEEVATAAMQRKKRRRMSGERSPSSNSPERIGSGSIADDQDVIAGNIVVPEIHNMVPPTASSTPRSLGSPSTPSMPSISVTPQINLQELPVSLPLPPPPPPPPQGQQSSHPLSTHHVSGHVTSGPHAPVNHLGSHGQQLSVQQQQQQQQQQQQQQQQHALNAGGQAVSADDLEIKPGIAEMIREEERAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTIYPTLANYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTNLSTSLSSSLSSNLQAAMQASQHHNNNNTSGSNAGLGGNSAGVGNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141751;
- 90% Identity
- iTF_00898877;
- 80% Identity
- iTF_00730160;