Fexs003516.1
Basic Information
- Insect
- Formica exsecta
- Gene Symbol
- bab2
- Assembly
- GCA_003651465.1
- Location
- NW:1573954-1607481[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-12 7e-09 34.6 0.0 1 39 393 432 393 436 0.90 2 4 2.2e-12 2.5e-09 36.0 0.1 2 39 448 485 447 488 0.94 3 4 5.1e-19 5.7e-16 57.3 0.0 1 45 502 547 502 547 0.97 4 4 9.3e-19 1e-15 56.5 0.1 1 42 554 596 554 597 0.97
Sequence Information
- Coding Sequence
- ATGGAGACAGATCGTTATTGGGGCGTGCACTACAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAACTACCAGTCGAACATGACGTCCGTGTTTCACCAGCTCCTGCAGACCGAAGCCTTCGTCGACGTCACCCTGGCATGCAACGAGGCTTCGTTAAAAGCGCATAAGGTGGTCCTGTCGGCCTGTAGTTCCTACTTTCAAAAACTCCTGCTGTCGAACCCCTGTAAACACCCGACCATCATCATGCCGCAGGACGTGTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGGGAGATCGACGTCTCACAAGCGGAGCTTCAGTCGCTTTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGCCTCAGCTCGCCGCCGAGGGAATCCGGCACCCCGAGATTGAACTACACGAAGCTGAAGAAGCATCATCAACGGTACAAGCGACCCAGAATCGAACGGCCCACGTTCGAGCCGCGCGCTACCGATCCAAGACATTACGAGCGCTACAAAGAGGAAGAGGCGATTACAATCAACGATTATAGCCGCGATAATAAAGAGAACCATCGGGATTGGCAAGCCGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCACTGGAAACTTGCCAACGtaataacaacaacaacaacggTAACGGCGCGAGTAACAACAACAACGGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCACCATCCTGATCCCGGGGAAGTCGATTTACCCCCCGAAACCCAACCCACTCCACCCAGCGCCACCTTGGTCGGCACTACCATCACCCATCTAAGGGATCCGGATCATCATACAGAGATTCAGAACTGCGACAGCGAGATCAAGATCAAGTTCGAGACGTTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCAGATCGGGCTAGCGTGAGCTCGAAAAATGCCGCCGACAGCGACAACATGATGATGATAACCCCAGAGCTGCTTGGACTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCAGGCGACAACAATTCGAGGGGGCATTCTGGACAGTCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTCTAGATGCATTGAGGAATCATAATATGAGTCTGACAAAAGCATCGGCAACGTTCAATATTCCCTCGACGACTCTGTGGCAACGAGCGCATCGACTGGGCATCGACACGCCCAAGAAGGATGGTCCCACGAAATCCTGGAGCGACGAAAGCTTAAACAACGCTTTAGAAGCTTTACGTACTGGCACTATTTCGGCTAATAAAGCGTCCAAGGCATTCGGCATACCTTCTAGCACATTGTATAAGATCGCGAGGAGGGAAGGCATCAGGCTGGCTGCACCGTTCAATGCAAGTCCCACGACGTGGACGCCCGCCGATCTGGATCGCGCTTTGGAAGCGATAAGATCTGGCCAAACGTCCGTTCAGAGAGCGTCGACAGAATTCGGCATACCCACGGGGACATTGTATGGAAGATGTAAGCGGGAAGGAATCGAACTTAGCAGGAGCAATCCCACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCTGTCAGATTAGGGCACATGAGCATCAATCAAGCAGCGATCCATTACAATCTGCCGTATTCGTCATTGTACGGGCGTTTCAAGAGAGGCAAATACGAAGAACCCGTCGTCGGCGACATTTCGCAGGATGGCAGCAGTCCACACTTTCATCAGAGTCCCAATCAGAATCACTCGTCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRATDPRHYERYKEEEAITINDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNGNGASNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSEIKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGDNNSRGHSGQSSSHHHGSKSWTQEDMDAALDALRNHNMSLTKASATFNIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01520386;
- 80% Identity
- iTF_00730167;