Basic Information

Insect: Formica aserva
Gene Symbol: -
Assembly: GCA_037039905.1
Location: JAXRKO010000013.1:2568898-2576164[+]

Transcription Factor Domain

TF Family: zf-LITAF-like
Domain: zf-LITAF-like domain
PFAM: PF10601
TF Group: Zinc-Coordinating Group
Description: Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.14 1.5e+03 0.9 0.2 6 15 7 16 3 30 0.73

2 3 2.5e-17 2.6e-13 51.4 3.8 6 69 92 155 88 156 0.95

3 3 1.7e-13 1.8e-09 39.1 6.5 4 67 241 303 238 306 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.14	1.5e+03	0.9	0.2	6	15	7	16	3	30	0.73
2	3	2.5e-17	2.6e-13	51.4	3.8	6	69	92	155	88	156	0.95
3	3	1.7e-13	1.8e-09	39.1	6.5	4	67	241	303	238	306	0.90

Sequence Information

Coding Sequence: ATGCAGTCGTACGTAGCGACCTGGTGCCCCGTATGTGACAAGCAGGTAAGCGTCGAGGGACGGGATACGTGCAGACTACTCGCACACATCCGTAAATATCATCCCAAGATCGCTGGCAAATGTTTGGACAATCAGAAGGACAAAAAGTTAAGAATATCGTCGAATCGGATTTCGTCTTCGTTCACACCAGGCGACGGTACTAGCGGCAAAAAGAACGAGTCGAAGAAAGTTTATGCCACTCGCGTGGACACGTGGAAATTACACGGCGAGAGGAAAGTCTGTCCCCAATGCCAGAAGGAAGCTGTACCGACGCTTCATTCGCGCGGCGACAAACTGACAACTTCTCATATCGGAGCTCTCTGCCTATTCGGATGTTGGCCATTTTGCTTTATTCCGTTAATGATGAGACGCGCGAGGAAGGTCCGCATGATCTGTCCGTTGTGCGGCCACGTTTACGGCACCTTCGAGTACAAAAACGCGAAGCTGACACCCTGTAAACCCGCTGACACTGGAAACTTGCAAGCAGCGGAACTTGCATCGCCCGAAGCAGCGTGCTTTTGTAAATCACAAAGGGCGGAATGCAAGCGGAACGAGCCGTCGCAAAGTGGCACGTTGTTTCCGTGGATTACAGCACTGAAAATACCTGATGATAAAGCTCGCGCACCGAAACAGCCGAACAAAGTCTTCTCAACGGAAGttGAAACATGGAAATATCATGACAAATCAATTTGCTGTCCTGTTTGCGGCGTGAAAGAGGTGCCGATAATTCTTAAACAACAGAAATTTACGACCTCCCGTCTAGCTGCATTTTGTTTATTGGGATGTTGGCCCTTCTGTTTCATCCCGTTGTTGATGAGCCGAGATAAAAGCGTGCGCACATTATGCCCGCACTGCGGCCACGATTATGGCGTTCGAGCAGATAAGCTCGTCTGCTCGCCTAAATGTGTGTCTAGCCATGGGGGACAGAGCGATTCTGCAATTTCACGGACGCATCATCTTTGGACAGAGTACAACGGCTCGCGAATGCAGTCAAGATATTGGGATCGCCAGACACTTTCCATGAGTGACGAAACCGCGAGGGCTCTCAGGGTCTCGGAAAAACGTCCTCAGCGAGGAGGCGAAGGAGGCGGATCCCGTTGCCGTCGGTCGCAATCGAAGCTATCGCGCGAATACGCCTTTTGTGCGAACCAGGTCACGAATGGCAGTTCACCTTATGACAGCAACGATTACGCAAACGAGAAGCGAGATCGTCGGCGCGACTTGGGCGAGACAAAAGCTCAAGAACGAAGCGAATCCGAGAGCGATAATAGGATGAtgttcgatttttattcgAGACAAGCCTGCTACCGGGAGTGCGGCTAA
Protein Sequence: MQSYVATWCPVCDKQVSVEGRDTCRLLAHIRKYHPKIAGKCLDNQKDKKLRISSNRISSSFTPGDGTSGKKNESKKVYATRVDTWKLHGERKVCPQCQKEAVPTLHSRGDKLTTSHIGALCLFGCWPFCFIPLMMRRARKVRMICPLCGHVYGTFEYKNAKLTPCKPADTGNLQAAELASPEAACFCKSQRAECKRNEPSQSGTLFPWITALKIPDDKARAPKQPNKVFSTEVETWKYHDKSICCPVCGVKEVPIILKQQKFTTSRLAAFCLLGCWPFCFIPLLMSRDKSVRTLCPHCGHDYGVRADKLVCSPKCVSSHGGQSDSAISRTHHLWTEYNGSRMQSRYWDRQTLSMSDETARALRVSEKRPQRGGEGGGSRCRRSQSKLSREYAFCANQVTNGSSPYDSNDYANEKRDRRRDLGETKAQERSESESDNRMMFDFYSRQACYRECG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00867850; iTF_00869294;
90% Identity: -
80% Identity: -