Fase008784.1
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- -
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000007.1:161668-162096[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-11 3.3e-08 34.6 0.0 2 35 11 45 10 49 0.94
Sequence Information
- Coding Sequence
- atggaaaataaaaagaaaggatCATGGAATCCGGATAACTTAAAAACTGCTCTTAATAAAATGATGTCAAAAAAGATGGGATTGAGAGAAGCTTCGCTAAAATATGATATTCCTAAAAGCACTTTACACGATAAAATAAGATGTCTAAAATCCGGCGAAGAAATTACATTGCAGCCTAAGATTGGTAGGTTCACCAAAACATTCCCACCAGAATATGAAGAACAATTAGTGAACCATGTGAAAGACTTATCGAATCGATGTTTGCCATTGATGAAAAAGGAATTTCTAAAGTTGGCATACGACTTAGCAGTAGAACTAAAGCTTCCTCATCGCTTCAACACTGAAAAAGAAACAGCTGGTAAACATTTTTACTATAACTTTATGGATATTTACTATAACTTTATGGTAGACATCCCGATTTATCACTAA
- Protein Sequence
- MENKKKGSWNPDNLKTALNKMMSKKMGLREASLKYDIPKSTLHDKIRCLKSGEEITLQPKIGRFTKTFPPEYEEQLVNHVKDLSNRCLPLMKKEFLKLAYDLAVELKLPHRFNTEKETAGKHFYYNFMDIYYNFMVDIPIYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729220; iTF_00128110;
- 90% Identity
- -
- 80% Identity
- -