Amia002887.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000905.1:56330-56707[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-12 3.9e-09 36.5 0.0 2 35 11 45 10 53 0.93
Sequence Information
- Coding Sequence
- atggaaaataaaaagaaaggatcATGGGATCAGGATAACTTAAAAACTGCTCTTGATAAAGTTATGTCAAAAGAAATGGGACTGAGAGAAGCTTCGCTAAAATATGATATTCCTAAAAGCACTTTACACGATAAAATAAGATGTCTAAAATCCGGCGAAGAAATTTCATTGCAGCCTAAGATTGGTAGGTTCACCAAAACATTCCCACCAGAATATGAAGAACAATTAGTGAACCATGTGAAAGACTTATCGAATCGATGTTTGCCActgatgaaaaaggaatttctAAAGTTGGCATATGACTTAGTAGTAGAGCTAAAGCTtcctctgtctcttatacacatctatgaAAAAGGAATTTCTAAAGTTGGCATATGA
- Protein Sequence
- MENKKKGSWDQDNLKTALDKVMSKEMGLREASLKYDIPKSTLHDKIRCLKSGEEISLQPKIGRFTKTFPPEYEEQLVNHVKDLSNRCLPLMKKEFLKLAYDLVVELKLPLSLIHIYEKGISKVGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729219;
- 90% Identity
- -
- 80% Identity
- -