Fase010443.2
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- -
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000008.1:2164052-2166633[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-13 1.6e-09 38.7 0.1 3 38 138 172 136 176 0.92 2 2 9.8 2.8e+04 -3.6 0.0 30 38 200 208 200 210 0.84
Sequence Information
- Coding Sequence
- ATGAAATGTACTTTAAAAATGTCAATGTTCATCGCATGCTGCTTAGATGTAGATGTCTTAAGTTCGCTCGTTTGGGAGGACTATCAGATACTCAGCACGAGCACGGCAAGCAGAGTTAACAGTTACGTGGAACGCAAGTTTAGATTCAAACATATGGATCACATCGCGGGTAGGTACAAGTGCTCCAAGTGCGCCAAGTCGTATCGATGGAAGCATCATCTCGTGGAGCACGTCAAGGCCTCATGCGGTCAGAAGAAAGCGGAGTGCTGTCCCTACTGCAGTTATAAAAGCAATCGCAAGTGGAACCTAAAGTCACACATGAAGAGGATCCACGCGAAATCATTTGCTTACGAGACCCGTTTACGAAACACGAGATATACGATGAAGTCGCGAAGATCTAAACGCAATTCGGAACAGGTGACGAGAGCCATAGAAGCCGTCGCCGGTGGAATGTCCTTGAGGAAGGCTGCAAAGATGTACTCCATATCCAAATCGGTTCTACATCGATACAGCAAGCATGATGGGCGCGCGGTGAACTACTTAAATTGCCTGAGGGAAACTTATCCGTGCAAGAACTGCGGCAAGATCTACAACTATTACTCCAGCCTGGCCAGGCATCTGAAGCACGAGTGCGGCGTGGAGCCCAAGTTTCACTGTCCCCTGTGCCCTTACAGAACGAAGCACAAATCGAGCCTAAACACCCACCTAAACGGCAGGCACATGAAGCGATTGAGCGAATTTTACACTTTGCCCAACGGTAACAAGATGTCTTCAACGGATGCCAGAAACTGA
- Protein Sequence
- MKCTLKMSMFIACCLDVDVLSSLVWEDYQILSTSTASRVNSYVERKFRFKHMDHIAGRYKCSKCAKSYRWKHHLVEHVKASCGQKKAECCPYCSYKSNRKWNLKSHMKRIHAKSFAYETRLRNTRYTMKSRRSKRNSEQVTRAIEAVAGGMSLRKAAKMYSISKSVLHRYSKHDGRAVNYLNCLRETYPCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKRLSEFYTLPNGNKMSSTDARN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00264194;
- 90% Identity
- iTF_01245142;
- 80% Identity
- iTF_00729641;