Fase020336.1
Basic Information
- Insect
- Formica aserva
- Gene Symbol
- ttk
- Assembly
- GCA_037039905.1
- Location
- JAXRKO010000018.1:838190-840056[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-14 2.1e-10 41.6 0.0 1 45 377 421 377 421 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAAGGAGCGACCCCACAAGAACACTCTCAAAAGTACAGCCTCCGCTGGAATAATCATCGATCGAATATGCTGACCGTCTTCGGCGATCTGCTGCAAACCGAGGCGTTCACGGACGTGTCCCTCGTCGCGGACAGCGGTCGGATCATCAAGTGCCACAAGATCGTCTTAGCGGCGTGCTCGTCCTACTTCCAAACTCTGTTCGTCGCTCTGCCATGCCCACACCCGACGATCATTCTCAAGGACGTCAAGTACACGGAGCTAAGGGCGATACTGGAGTTTATATACCGCGGCGAGGTGACCGTACAACAGGAGCAGCTGAGCAATCTGCTCAAGATCGCAGAAATGCTGCAGGTGAAGGGACTGGTGGAGCACAATGGTAGCGACAACGTTGGAGAACGGTTCTCGGCGTACAGCGATTTTCGTCGACACGAGGACATGATGGAGACGTCGTTGTCGCCACCACCGGCCATCAGCACCAGCACTAATGCCAATAGCATGGCAGCGCACAGCAGCAGTCACGTGTCACCGCCGCATTCCACCGGTGACACTTACAGTAGTTTTTACAGCAAACCTTTGGGGACGACCTCGGAAATGAGTCAAATCCAAAGTCATCTCGCGTTTTGGCCGCTGTCCTTACCGTTGCACCAAGGAGTTTCCACAGGTCATCAAATATCGCCACACTCCTCTCCTGTCGCCTCTGTTCTCTGTGCTGGCGGCGGAGGCGGCGGCTCCTCTCACGATAACAGCTTCGAGACAACCTCGCCGCTCAAGCTCGTAAAGAAGACGCTGCATTCGAACCTGTTGAATCACGACACGCCGATACTGCGCACTGTGCTCGGCCAGGGTCACGTTGACAGTTCCGTGACGGGTGTACCGTTATTGCAGCCTGACAGTCACGAATCGATGCATTTTCGAGCGAGCAACGGTTCTGCAAACGACAATGACAATCGTCGCAGCAACACCGATTTGGCCCATAGCGAGGCGGCCCACAGCTCCTACATGGATGTTCCTTCTATGGATGAGGATGAGAAGCAGCCGTCGCCGCAATCGCACACCGGTGACAAGACAAGTAACGCGACTCATGTGCAGGCGAAGCCCGAATGGAAACGATATAAACAATACACCCGAGATGACATCCAGGCAGCGATCCAGGCAGTGAAATCGGGCATAAGCGCTGTGCAAGCGGCGCGCCAATTTGGCGTGCCATCTCGCACGCTCTACGACAAGGTGAAGAAGCTCGGTATCCCGACATCGCGACCGTTCAAGCGTTCAGTGAGCAACGGTGGTAGCGCGGCCCGCTTCCCGTACGGCATCGGTGGCAACGTGAACGGCAGGATTTACGGCGGTAGCATATTGTCCGAAAATGAGAACGAGAACAGTATGAATGTCAATATTGAGAACTTGGCTACTAGCACGTCGAGCGCTAGCTCGTTGGTGGCCGCTTACGTCAAACCGGCATCGAAGGATGCGTCGCAGGATCGCGACTCGATGTCCGACTCGATGGCACGCTACAGTCCAAGTCCGGTcatacgctgtgccaagcaaAAGCAACAACAGCAGAACATGGACGATGAGGTGGAAGATCTATCGGTGAGTCGTAAATCTGATGTTCCGGTGATAATGCTAACATCGTCGGACGCGGTCAAGGATGAACCGCAGGAAACCGGGCCGAACAACAATGATTGCTGCGACTACAgttaa
- Protein Sequence
- MSEGATPQEHSQKYSLRWNNHRSNMLTVFGDLLQTEAFTDVSLVADSGRIIKCHKIVLAACSSYFQTLFVALPCPHPTIILKDVKYTELRAILEFIYRGEVTVQQEQLSNLLKIAEMLQVKGLVEHNGSDNVGERFSAYSDFRRHEDMMETSLSPPPAISTSTNANSMAAHSSSHVSPPHSTGDTYSSFYSKPLGTTSEMSQIQSHLAFWPLSLPLHQGVSTGHQISPHSSPVASVLCAGGGGGGSSHDNSFETTSPLKLVKKTLHSNLLNHDTPILRTVLGQGHVDSSVTGVPLLQPDSHESMHFRASNGSANDNDNRRSNTDLAHSEAAHSSYMDVPSMDEDEKQPSPQSHTGDKTSNATHVQAKPEWKRYKQYTRDDIQAAIQAVKSGISAVQAARQFGVPSRTLYDKVKKLGIPTSRPFKRSVSNGGSAARFPYGIGGNVNGRIYGGSILSENENENSMNVNIENLATSTSSASSLVAAYVKPASKDASQDRDSMSDSMARYSPSPVIRCAKQKQQQQNMDDEVEDLSVSRKSDVPVIMLTSSDAVKDEPQETGPNNNDCCDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280541;
- 90% Identity
- iTF_00280541;
- 80% Identity
- iTF_00729434;