Cnig058265.1
Basic Information
- Insect
- Cataglyphis niger
- Gene Symbol
- ttk
- Assembly
- GCA_004329405.1
- Location
- SJPC01001792.1:23765-25639[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-13 9e-10 40.0 0.0 1 45 372 416 372 416 0.96
Sequence Information
- Coding Sequence
- atgtCGGACGGCGCGACCTCACAAGAACACTCTCAAAAGTACAGCCTCCGCTGGAATAATCATCGTTCGAATATGCTGACCGTTTTCGGCGATCTGCTGCAAACCGAGGCGTTCACCGATGTGTCCCTCGTCGCGGACAGCGGTCGGATCATCAAGTGTCACAAGATCGTCTTAGCGGCGTGCTCGTCCTACTTCCAAACTCTGTTCGTCGCTCTGCCATGTCCACATCCGACGATCATTCTCAAGGACGTTAAGTACACGGAGCTAAGAGCGATACTGGAGTTTATATATCGCGGCGAGGTGACCGTGCAACAGGAACAGCTGAGCAATCTACTCAAGGTTGCAGAAATGTTGCAGGTGAAGGGTCTGGTGGAGCACAATGGTAGCGACAGCTTTGGAGAACGGTTCTCGGCGTACGATTTTCGTCGACACGAGGACATGATGGAGACGTCGTTGTCACCACCACCGGCTATCAGCACCAGCACTAATGCCATGGCGGCGCACAGCAGCAGTCACGTGTCACCGCCGCATTCCACCGGTGACACTTACAGTGGTTTTTACAACAAGCCCTTGGGAACGACCTCAGATATGAGTCAAATCCAAAGTCATCTCGCGTTTTGGCCGCTAGCCTTACCGTTGCACCAAGGAGTTTCCACAGGTCATCAAATATCGCCACATTCCTCTCCTGCCGCCTCTGTTCTCTGTCCTGGCGGAGGCGGCGGCTCCTCTCATGATAACGGCTTCGAGACAACCTCGCCGCTCAAGCTCGTAAAGAAGACGCTGCATTCGAATCTACTGACGAATCACGACACGCCGATACTACGTACCGTACTCGGCCAGGGTCAAGCTGACAGTTCCGTACCGTTGTTACACTCTGACAGTCATGAATCGATGCATTTTCGCGCGAGCAACGGCTCTGCAAACGACAACGACAGTCGTCGCAGCAACACCGATTTAGCCCATGGTGAGACGGCCCACAGTTCGTATATGGATATTCCTTCTATGGATGAGGATGAGAAGCAGCCATCGCCGCAGTCACACATCGGTGATAACAAGACAGGTAACGCGACTCATGTGCAAACGAAGCCCGAATGGAAACGATACAAACAATACACCCGAGATGACATCCAGCAAGCGATCCAGGCAGTAAAATCTGGCACAAGCGCCGTACAAGCAGCACGACAATTCGGCGTGCCGTCTCGCACGCTGTACGACAAGGTGAAGAAGCTCGGTATTCCGACGTCGCGACCGTTCAAGCGTGCGGTGAGCAACGGTGGTAGTGCGGCCCGCTTTCCGTACGGCATCGGTGGTAATATAAACGGCAGGATTTATAGCAGTAGCATATTGTCCGAAAGCGAGAACGAGAACAGTACCAACGTCAACATTGAAAACTTGGCTACTAGCACATCGAACGCTAGCTCGTTGGTGGCCGCTTACGTTAACCCGGTATCGAAGGATGTGTCGCAGGATCGCGACTCGATGTCCGACTCAATGGCACGCTACAGTCCAAGTCCGGTCATACGCTGTGTCAAGCaaaagcagcaacaacagcaaaacatGGACGATGAGGTGGAAGATCTATCGGTGAGTCGTAAATCTGATGTTCCGGTGATAATGCTAAAATCATCGGACGCGATCAAGGATGAACCGCAGGAAACCGGGCCAAACAACAATGATTGCTGCGACtacagttaa
- Protein Sequence
- MSDGATSQEHSQKYSLRWNNHRSNMLTVFGDLLQTEAFTDVSLVADSGRIIKCHKIVLAACSSYFQTLFVALPCPHPTIILKDVKYTELRAILEFIYRGEVTVQQEQLSNLLKVAEMLQVKGLVEHNGSDSFGERFSAYDFRRHEDMMETSLSPPPAISTSTNAMAAHSSSHVSPPHSTGDTYSGFYNKPLGTTSDMSQIQSHLAFWPLALPLHQGVSTGHQISPHSSPAASVLCPGGGGGSSHDNGFETTSPLKLVKKTLHSNLLTNHDTPILRTVLGQGQADSSVPLLHSDSHESMHFRASNGSANDNDSRRSNTDLAHGETAHSSYMDIPSMDEDEKQPSPQSHIGDNKTGNATHVQTKPEWKRYKQYTRDDIQQAIQAVKSGTSAVQAARQFGVPSRTLYDKVKKLGIPTSRPFKRAVSNGGSAARFPYGIGGNINGRIYSSSILSESENENSTNVNIENLATSTSNASSLVAAYVNPVSKDVSQDRDSMSDSMARYSPSPVIRCVKQKQQQQQNMDDEVEDLSVSRKSDVPVIMLKSSDAIKDEPQETGPNNNDCCDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280667; iTF_01245140; iTF_01245322; iTF_00280057; iTF_00279885; iTF_00729216; iTF_00729434;
- 90% Identity
- iTF_00280667; iTF_01245140; iTF_01245322; iTF_00280057; iTF_00279885; iTF_00729216; iTF_00729434;
- 80% Identity
- iTF_00280667;