Fari007363.1
Basic Information
- Insect
- Fopius arisanus
- Gene Symbol
- bab1
- Assembly
- GCA_000806365.1
- Location
- NW:3004805-3012295[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5 7e+03 -3.9 0.0 5 14 223 232 222 235 0.85 2 2 1.5e-09 1.9e-06 26.7 0.1 2 45 358 401 357 401 0.90
Sequence Information
- Coding Sequence
- ATGCACAAACGAGTTTTCTATCTTCcttattcccttttttcccATGTATATCCAAGCCCATCAAGCCCTCTAGCGTCTTCGTCAGAACAGCAGTTCTGCCTTCGGTGGAACAATCACAGAACAAATCTGTTGACAGCTTTCAGCGAATTATTTCACAACGGTGCATTCACAGATGTGGAACTCCTGGTGGAGGGGCTCTCGGGTTTGGTGCCCTTCAAGTGCCACAAAATGGTACTTGCCGCGTGTTCATTGTACTTCCAGGAGATATTTTCGTACGCCTCCACAGACCAGTACCCTATTATCGTGCTGACTAACGTGAGGGAGCCTGAGATGAAGGCAATCCTTGAGTTCATGTACCAGGGGGAGGTCAATGTGTCCCAGGACGAGATGGCGGAGATATTCAGGGTGGCGAGGATGCTGAAGATAAAGGGACTCGTTGAGTATGACAAATCACATGAACCCAGAGACCCTTCGGATTCTCCACCACCTGCAATTAGCAGTACAGAGCGCACTGCGTCCATTAATGAAAGCATCCACAACGACTATCGCTCACCCCCGCATTCCACCAGTGCATCCTCCTATTTTCCTGGCTATGGCAAGGGATCCGGTCTAATGCACAATCCTGCTGGGCACATTCCACCCCCTGGATGGAGTCCTCTCGCCAGTTTATCACTCGCTGCACAATCTGTTATGAATGCACCCCTCACCCCGAGGGCTGCCGCACTCTTCCCCGGTGTCTACGATACTGAGGCCAATCACATCATCCGCAAGCAGATGAACAGCCTCATGCTCAATAGGGACACCCCCATCCTCAGGACTGTCCTCGGGCAAGGGCAGGCTGATAGCTCCCAGATATTACCACCTTCACATGCCGACCCTCATGACCTTTATCGTAGCTCCAGCAACGGATCAGCACATGAAATCGATGACCGCAAGAGCATGGATCTTTCACATCGTAATAGCAGTGGACACAGCCCCTTCTCCGCCGACGTCTCCTTCGAGGAGTTTGATAAGAAATCCGGCCAGCAAAATCGAAAGAACAAAGAGTGGAAGCGCTACAAGCAGTACACAAAAGAGCACATGGAAAAGGCGATTATCGCGGTGAAAGGTGGTGAGACAGCATTGAAAGCTTCAAAGGCGTACGGAATTCCTTCCCGCACGCTCTACGACAAAGTGAAGAAAATGGGAATCACAACGCAGAGAAATATTCGACGTCACAGGACAAGTAGTGGGGCCCATTTTCCGCACGGCATAGGGGGCAACAGGAATGGGGGCATTTACAGAGGTATGTCAGATATCGACAATGACAACGATTACAGCAACAGCATGATGGAAGGATCAGCTGCTCTTATGGACATAGCGTACAGTCGTGGTCGCGATCAATCCGAGGACCACGAGGCCAGTTTCGATCATTCGAGGATATCCACAAGTCCCGATGAAGAGCCACGAGAAGAAATCAAGTATGAGAATGAGGATGACGTTCAAGATCTCTCGATTAATCGTAGAAATGTCATCGTACCACCCTCAAATCCGCCCGCCAAAGAAGAAGACGACGCCTCAAAGAACTGA
- Protein Sequence
- MHKRVFYLPYSLFSHVYPSPSSPLASSSEQQFCLRWNNHRTNLLTAFSELFHNGAFTDVELLVEGLSGLVPFKCHKMVLAACSLYFQEIFSYASTDQYPIIVLTNVREPEMKAILEFMYQGEVNVSQDEMAEIFRVARMLKIKGLVEYDKSHEPRDPSDSPPPAISSTERTASINESIHNDYRSPPHSTSASSYFPGYGKGSGLMHNPAGHIPPPGWSPLASLSLAAQSVMNAPLTPRAAALFPGVYDTEANHIIRKQMNSLMLNRDTPILRTVLGQGQADSSQILPPSHADPHDLYRSSSNGSAHEIDDRKSMDLSHRNSSGHSPFSADVSFEEFDKKSGQQNRKNKEWKRYKQYTKEHMEKAIIAVKGGETALKASKAYGIPSRTLYDKVKKMGITTQRNIRRHRTSSGAHFPHGIGGNRNGGIYRGMSDIDNDNDYSNSMMEGSAALMDIAYSRGRDQSEDHEASFDHSRISTSPDEEPREEIKYENEDDVQDLSINRRNVIVPPSNPPAKEEDDASKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01273018;
- 90% Identity
- iTF_00728768;
- 80% Identity
- iTF_00728768;