Fatl068225.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- Slc7a9_1
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000018.1:6084304-6112440[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.19 1.7e+03 1.5 0.5 24 47 53 75 43 79 0.57 2 6 8.1 7.5e+04 -3.7 0.9 36 47 111 122 104 126 0.52 3 6 2.3 2.1e+04 -2.0 0.1 27 42 182 197 174 202 0.59 4 6 8 7.5e+04 -3.7 0.2 32 36 309 313 289 322 0.60 5 6 0.77 7.2e+03 -0.5 0.3 23 43 435 454 430 464 0.61 6 6 3.2e-26 3e-22 80.8 13.9 2 70 537 606 536 606 0.97
Sequence Information
- Coding Sequence
- ATGGAGAAAGCTGAAAAAGGAAGAAGTGAAAGTGACTTAGAGAACATCGGACTGAAACGAGAAGTTGGACTTGCAAGTGCCGTGAATTTTATGCTCAGTTTTGTCATAGGTACCGGCATTTTTGTGACTCCAGGAACCGTGCTGGCCCAATCTGGCTCTGTTGGGATGTCCCTTTTCATTTGGGCTTTATGTGGATTCATCTCATTTCTAGCCTGTTTGCCCTTTGGAGAACTCAGTACAGTTGTGCCAAAGTCGGGCAGTATCTACATCTACCTGTACACAACTTTTAACAAAAGACACCCGCTTTTCGGCGGTCTCCCGGCATTCACATTTTTCTGGATGATGTACGTCATCATCCTTCCTTGCTCCGTCGCTTTAGGCGCTCTACTCTTTGCGGAATATACTTGGGTGATAGTCGAAAGCATGGTTTATGTTGAAAACGGAGGTGTTATTAAAGTCATCCTTGGAGCTTCCGTCCTAATTATCATTGGAGCATTAAATTGCTACAGCGTCAAGATATATGTTAAATCTCAGGATGTGTTAGCCTACATCAAGATGGCAGCTATTGCTTTCTTCATCGGATGTGGCGTGTACTTACTCGCTACAGgaCAAGCTCTAAAATTCAATCCAGGATTTGAGGGAACAAACTATTCCATAAAAGCAATTACTCAAGCTGTTTATTTTGGTCTCTACACTTATGATGGAGGATGTTTCATCACAAATATCACCGAAGAAATGAAAAATCCAGAGAAGAACATCTTGCGTAGTATCCTGATTGGGCTGACAATCACAACTCTGACTTACGTCTTGCTCAACGTCACGTTTCTGACAGTGTTGACTCCTGATGAAGTGGCCAACGGCTCAACAGTCATCGCTCAATTTGCCATAAAACTGTTCGGAGTGGCAGGTGGAGCGATATCAGCCGTTATAATCTGCTTGGCTCTCCTCACCAGCATCATGTCAGGAATTTTCTACGCTTCCCGAATAGGCTACGTGGCAGCGAGAGAGGGTCATATGATGGACTTCCTCTGCTGCATTCACAAGTCACGACAGACTCCCGCGCCCGCAGTTATATCTCAGGTTCTCCTGGCTCTGATGTTTTACTTTGTCGTCGGGGGTAATGCTAACTCCCTCATCGACACTTATGCTTTTTTCGTCTGGTTGTCGTACGGAATGGCAATGGCTTGCGTTCTGGTGTTGAGAAGGCAGCTGCCCAACGCCCCTCGTCCTTTTCGGGTTCCAACGGTGATACCAGTGTTGATAGCTCTTCTCTCGATCCACCTCTTTGTAACTTCGCTGGTTTCCGGCCCACTGAGAATCATTATCATCTTTATCGTTTGCGTTTTTTTGTCAAGTCTTGTTTATTACGTATTTATCTACAGAAAATTAAGATTTTCAAGTTTAGAGACGGACAGCCTGATGGCCGGAAAGAGCGCAGGTTCGATCCCCGCCTACCACGGGCCCCCGCCGGCCGCCCCGCCCAGCTACTCCCAGGCCGTCGGGGGCGTCCCCCCGTCCAGCCCCTTCACTCCGTCCCAGCCCGCCAAGCAGCATGGCCCGACGGCTCACGGGCCGGTGATCGTAACTACTGTGGTACCGGTGGGCAGTCAACCGACACACATGATCTGTCCGCACTGCTACAGCGAGATCACCACTCGGACCAAGACAGAGCCCGGCCTCATCGCCTACATATCCGGCACGCTCATCGCTCTCTTCGGATTCATCTGCGGCTGCTGTCTGATCCCCTGTTGCATCGACTCTTGCATGGACGTCCATCACACTTGCCCCCACTGTAACGCGTATCTCGGACGGTACCGCCGTTAA
- Protein Sequence
- MEKAEKGRSESDLENIGLKREVGLASAVNFMLSFVIGTGIFVTPGTVLAQSGSVGMSLFIWALCGFISFLACLPFGELSTVVPKSGSIYIYLYTTFNKRHPLFGGLPAFTFFWMMYVIILPCSVALGALLFAEYTWVIVESMVYVENGGVIKVILGASVLIIIGALNCYSVKIYVKSQDVLAYIKMAAIAFFIGCGVYLLATGQALKFNPGFEGTNYSIKAITQAVYFGLYTYDGGCFITNITEEMKNPEKNILRSILIGLTITTLTYVLLNVTFLTVLTPDEVANGSTVIAQFAIKLFGVAGGAISAVIICLALLTSIMSGIFYASRIGYVAAREGHMMDFLCCIHKSRQTPAPAVISQVLLALMFYFVVGGNANSLIDTYAFFVWLSYGMAMACVLVLRRQLPNAPRPFRVPTVIPVLIALLSIHLFVTSLVSGPLRIIIIFIVCVFLSSLVYYVFIYRKLRFSSLETDSLMAGKSAGSIPAYHGPPPAAPPSYSQAVGGVPPSSPFTPSQPAKQHGPTAHGPVIVTTVVPVGSQPTHMICPHCYSEITTRTKTEPGLIAYISGTLIALFGFICGCCLIPCCIDSCMDVHHTCPHCNAYLGRYRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -