Basic Information

Insect: Flexamia atlantica
Gene Symbol: -
Assembly: GCA_035578135.1
Location: JAQJVK010000026.1:4333692-4337267[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.38 4.1e+02 3.1 0.0 1 17 64 80 64 86 0.91

2 19 0.38 4.1e+02 3.1 0.0 1 17 98 114 98 120 0.91

3 19 0.38 4.1e+02 3.1 0.0 1 17 132 148 132 154 0.91

4 19 0.38 4.1e+02 3.1 0.0 1 17 166 182 166 188 0.91

5 19 0.38 4.1e+02 3.1 0.0 1 17 200 216 200 222 0.91

6 19 0.38 4.1e+02 3.1 0.0 1 17 234 250 234 256 0.91

7 19 0.83 9e+02 2.0 0.0 1 16 268 283 268 290 0.85

8 19 0.67 7.2e+02 2.3 0.0 1 17 302 318 302 324 0.91

9 19 0.38 4.1e+02 3.1 0.0 1 17 336 352 336 358 0.91

10 19 0.38 4.1e+02 3.1 0.0 1 17 370 386 370 392 0.91

11 19 0.38 4.1e+02 3.1 0.0 1 17 404 420 404 426 0.91

12 19 0.38 4.1e+02 3.1 0.0 1 17 438 454 438 460 0.91

13 19 0.38 4.1e+02 3.1 0.0 1 17 472 488 472 494 0.91

14 19 0.38 4.1e+02 3.1 0.0 1 17 506 522 506 528 0.91

15 19 0.38 4.1e+02 3.1 0.0 1 17 540 556 540 562 0.91

16 19 0.38 4.1e+02 3.1 0.0 1 17 613 629 613 635 0.91

17 19 0.38 4.1e+02 3.1 0.0 1 17 647 663 647 669 0.91

18 19 0.38 4.1e+02 3.1 0.0 1 17 681 697 681 703 0.91

19 19 0.38 4.1e+02 3.1 0.0 1 17 715 731 715 737 0.91

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.38	4.1e+02	3.1	1	17	64	80	64	86	0.91
2	19	0.38	4.1e+02	3.1	1	17	98	114	98	120	0.91
3	19	0.38	4.1e+02	3.1	1	17	132	148	132	154	0.91
4	19	0.38	4.1e+02	3.1	1	17	166	182	166	188	0.91
5	19	0.38	4.1e+02	3.1	1	17	200	216	200	222	0.91
6	19	0.38	4.1e+02	3.1	1	17	234	250	234	256	0.91
7	19	0.83	9e+02	2.0	1	16	268	283	268	290	0.85
8	19	0.67	7.2e+02	2.3	1	17	302	318	302	324	0.91
9	19	0.38	4.1e+02	3.1	1	17	336	352	336	358	0.91
10	19	0.38	4.1e+02	3.1	1	17	370	386	370	392	0.91
11	19	0.38	4.1e+02	3.1	1	17	404	420	404	426	0.91
12	19	0.38	4.1e+02	3.1	1	17	438	454	438	460	0.91
13	19	0.38	4.1e+02	3.1	1	17	472	488	472	494	0.91
14	19	0.38	4.1e+02	3.1	1	17	506	522	506	528	0.91
15	19	0.38	4.1e+02	3.1	1	17	540	556	540	562	0.91
16	19	0.38	4.1e+02	3.1	1	17	613	629	613	635	0.91
17	19	0.38	4.1e+02	3.1	1	17	647	663	647	669	0.91
18	19	0.38	4.1e+02	3.1	1	17	681	697	681	703	0.91
19	19	0.38	4.1e+02	3.1	1	17	715	731	715	737	0.91

Sequence Information

Coding Sequence: ATGCTTTTGATTAAACGGGGAAGGCATCATCAAGGTGGCAACCAGCTTCTCAAGCAACCCAAGAACTTACCTGATTATCCTTTATCTTCGTCATTAAAGGACAGATTATCCTTCATCTCTGTCCAGGTGGGATCCTTGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCCCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCCCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCCCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCTTGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATATCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCCCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCCCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTACTACGTCAGCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCCCTGACCAATGTCCAGGTGGGATCCATGCTGCCGCTGACCCAGGCCCTGCTGAGTCTGCAGGAGCAGAAACCCCCCGTCAGCCCGGAGGAGCTGCACCTAGCGCTGACCAATGTCCAGGTTCTACGTCAGCACGTGGCGTGCGCTGTGCCGTGGTTGCTACACTGA
Protein Sequence: MLLIKRGRHHQGGNQLLKQPKNLPDYPLSSSLKDRLSFISVQVGSLLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSLLPLTQALLSLQEQKPPVSPEELHLALTNIQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVLRQQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVGSMLPLTQALLSLQEQKPPVSPEELHLALTNVQVLRQHVACAVPWLLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00727253;
90% Identity: iTF_00727253;
80% Identity: -