Fatl068530.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000018.1:11781699-11787401[-]
Transcription Factor Domain
- TF Family
- bHLH
- Domain
- HLH domain
- PFAM
- PF00010
- TF Group
- Basic Domians group
- Description
- A basic helix-loop-helix (bHLH) is a protein structural motif that characterizes one of the largest families of dimerizing transcription factors.It should not be confused with the helix-turn-helix domain.The motif is characterized by two α-helices connected by a loop. In general, transcription factors including this domain are dimeric, each with one helix containing basic amino acid residues that facilitate DNA binding. In general, one helix is smaller, and, due to the flexibility of the loop, allows dimerization by folding and packing against another helix. The larger helix typically contains the DNA-binding regions. bHLH proteins typically bind to a consensus sequence called an E-box, CANNTG. The canonical E-box is CACGTG (palindromic), however some bHLH transcription factors, notably those of the bHLH-PAS family, bind to related non-palindromic sequences, which are similar to the E-box. bHLH TFs may homodimerize or heterodimerize with other bHLH TFs and form a large variety of dimers, each one with specific functions.https://en.wikipedia.org/wiki/Basic_helix-loop-helix
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 1.5e-13 2.4e-10 42.4 0.5 2 50 103 152 102 154 0.95 2 28 2.1 3.3e+03 0.3 0.1 41 50 173 182 171 184 0.89 3 28 4.4 6.7e+03 -0.7 0.4 41 50 203 212 202 214 0.92 4 28 4.4 6.7e+03 -0.7 0.4 41 50 233 242 232 244 0.92 5 28 4.4 6.7e+03 -0.7 0.4 41 50 263 272 262 274 0.92 6 28 2.1 3.3e+03 0.3 0.1 41 50 293 302 291 304 0.89 7 28 2.1 3.3e+03 0.3 0.1 41 50 323 332 321 334 0.89 8 28 2.1 3.3e+03 0.3 0.1 41 50 353 362 351 364 0.89 9 28 5 7.7e+03 -0.9 0.3 41 50 382 391 382 393 0.92 10 28 2.1 3.3e+03 0.3 0.1 41 50 412 421 410 423 0.89 11 28 2.2 3.3e+03 0.3 0.2 40 50 441 451 440 453 0.89 12 28 2.1 3.3e+03 0.3 0.1 41 50 472 481 470 483 0.89 13 28 2.1 3.3e+03 0.3 0.1 41 50 532 541 530 543 0.89 14 28 2.1 3.3e+03 0.3 0.1 41 50 562 571 560 573 0.89 15 28 2.1 3.3e+03 0.3 0.1 41 50 592 601 590 603 0.89 16 28 2.1 3.3e+03 0.3 0.1 41 50 622 631 620 633 0.89 17 28 2.1 3.3e+03 0.3 0.1 41 50 652 661 650 663 0.89 18 28 2.1 3.3e+03 0.3 0.1 41 50 682 691 680 693 0.89 19 28 2.1 3.3e+03 0.3 0.1 41 50 712 721 710 723 0.89 20 28 2.1 3.3e+03 0.3 0.1 41 50 742 751 740 753 0.89 21 28 2.1 3.3e+03 0.3 0.1 41 50 772 781 770 783 0.89 22 28 2.1 3.3e+03 0.3 0.1 41 50 802 811 800 813 0.89 23 28 2.1 3.3e+03 0.3 0.1 41 50 832 841 830 843 0.89 24 28 2.1 3.3e+03 0.3 0.1 41 50 862 871 860 873 0.89 25 28 2.1 3.3e+03 0.3 0.1 41 50 892 901 890 903 0.89 26 28 2.1 3.3e+03 0.3 0.1 41 50 922 931 920 933 0.89 27 28 2.1 3.3e+03 0.3 0.1 41 50 952 961 950 963 0.89 28 28 8.7 1.3e+04 -1.7 0.1 41 49 982 990 980 990 0.91
Sequence Information
- Coding Sequence
- ATGTCCGGAGCGGTGATGCCTCCCATGCCTCCCTGCTGCACTGCTGCAACGCCCGCGACCGCCATCGCCGCTGCGACCAAAGTTGAAAGTGCAGTGTCACTTGCACGCGCGCAAACCACGCTTTATCGCCGCCGAGATAAACCGGCCCTGCTGACCCGGCGGAGAAGGCGGCTGCAGCGCGATCTTGAACTTGGCGCCGAGAATAGCTTCAGCGGCTCGGTCGCAGAGCACAACACTGCAACCGTGTCAATTACAACTGGCTCTGACTCACAGACTTTACGCGGGAAACACGGTCTCCACAACAACCGCGTGCAGCGCAACATGGCGGAGAAGATGCGGCGAGACAAACTCAACTTCTTCATCAACGAGCTGTCCACGCTCGTGCCCATCATCAGCTTCTCGCCCAAGAAACTGGACAAGACCAGCATCCTGCGGCTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTGCACAATGGCGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCATCATCCTGCGACTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTATAGTTTGCTTCATCATCCTGAGACTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTATAGTTTGCTTCATCATCCTGAGACTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTGCACAATGGCGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGGCTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTTTGTATCGGTTTAGTTTGCTTCATCCTGCGGCTCGCCGCCACCTACATACGGCTCCACAACGGTGAATGTCCTCACTTGTGTACTCTGTGTATCAGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTTTGTGTATCGGTATAGTTTGCTACAACATCCTGCGACTCGCCGCCACCTACATACGTCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACAACCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTACGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGGCTCGCCGCCACCTACATACGGCTGCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGGCTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGGCTCGCCGCCACCTACATACGGCTCCACAATGGTGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATACGGCTGCACAATGGCGAGTGTCCTCACTTGTGTACTCTGTGTATCGGTTTAGTTTGCTTCAACATCCTGCGACTCGCCGCCACCTACATATGGCTCCACACTGAGGCTTCCTATCACGAGGCGTCCGTCCCTGCTTCCGGGCGGCTGGGGCAGTAA
- Protein Sequence
- MSGAVMPPMPPCCTAATPATAIAAATKVESAVSLARAQTTLYRRRDKPALLTRRRRRLQRDLELGAENSFSGSVAEHNTATVSITTGSDSQTLRGKHGLHNNRVQRNMAEKMRRDKLNFFINELSTLVPIISFSPKKLDKTSILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFIILRLAATYIRLHNGECPHLCTLCIGIVCFIILRLAATYIRLHNGECPHLCTLCIGIVCFIILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFILRLAATYIRLHNGECPHLCTLCISLVCFNILRLAATYIRLHNGECPHLCTLCIGIVCYNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNNLRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIRLHNGECPHLCTLCIGLVCFNILRLAATYIWLHTEASYHEASVPASGRLGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -