Fatl005685.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- dpn_1
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000001.1:79956116-79964819[+]
Transcription Factor Domain
- TF Family
- bHLH
- Domain
- HLH domain
- PFAM
- PF00010
- TF Group
- Basic Domians group
- Description
- A basic helix-loop-helix (bHLH) is a protein structural motif that characterizes one of the largest families of dimerizing transcription factors.It should not be confused with the helix-turn-helix domain.The motif is characterized by two α-helices connected by a loop. In general, transcription factors including this domain are dimeric, each with one helix containing basic amino acid residues that facilitate DNA binding. In general, one helix is smaller, and, due to the flexibility of the loop, allows dimerization by folding and packing against another helix. The larger helix typically contains the DNA-binding regions. bHLH proteins typically bind to a consensus sequence called an E-box, CANNTG. The canonical E-box is CACGTG (palindromic), however some bHLH transcription factors, notably those of the bHLH-PAS family, bind to related non-palindromic sequences, which are similar to the E-box. bHLH TFs may homodimerize or heterodimerize with other bHLH TFs and form a large variety of dimers, each one with specific functions.https://en.wikipedia.org/wiki/Basic_helix-loop-helix
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0035 5.3 9.2 0.1 32 51 16 35 13 37 0.88 2 17 2.2e-05 0.033 16.3 0.3 29 51 58 80 35 82 0.82 3 17 2.2e-05 0.034 16.3 0.4 29 51 103 125 81 127 0.83 4 17 4.5e-05 0.069 15.3 0.5 29 53 148 172 127 172 0.85 5 17 0.00011 0.17 14.0 0.1 29 51 193 215 183 217 0.86 6 17 0.0001 0.15 14.1 0.3 29 51 238 260 216 262 0.84 7 17 9.9e-06 0.015 17.4 0.5 29 53 283 307 261 307 0.85 8 17 0.00011 0.17 14.0 0.1 29 51 328 350 319 352 0.86 9 17 4.4e-05 0.067 15.3 0.4 29 53 373 397 351 397 0.85 10 17 1e-05 0.015 17.4 0.2 30 53 419 442 409 442 0.87 11 17 1.2e-05 0.019 17.1 0.2 29 53 463 487 454 487 0.87 12 17 1.5e-05 0.023 16.8 0.1 30 53 509 532 498 532 0.87 13 17 1.5e-05 0.023 16.8 0.1 30 53 554 577 543 577 0.87 14 17 1.2e-05 0.019 17.1 0.2 29 53 598 622 589 622 0.87 15 17 1.2e-05 0.019 17.1 0.2 29 53 643 667 633 667 0.87 16 17 0.00066 1 11.5 0.2 30 53 689 712 678 712 0.87 17 17 4.4e-06 0.0067 18.5 0.2 27 53 731 757 721 757 0.80
Sequence Information
- Coding Sequence
- ATGAGGTGCTCAGATTGTTCTTACTTTGCCACACAAGATCCAGCAAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGAGGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTATGTTGCAGCCGGACAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTACCACTACATACACCGCTTGTGATGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTACCACTACATACACCGCTTGTGTTGCAGCCGGCCAGGCACTCCAAGCAGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTACAGCCGGCCAGGCACTCCAAGCAGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTACAGCCGGCCAGGCACTCCAAGCAGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTATGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAACCACTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTACAGCCGGCCAGGCACTCCAAGCAGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTACAGCCGGCCAGGCACTCCAAGCAGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAACCACTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTATGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGTGGCAGCAGCTCAGTCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGTGGCAGCAGCTCAGTCCTCTGTCGTCCGCTACATTAACACTACATACACCGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGTGGCAGCAGCTCAGTCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGTGGCAGCAGCTCAGTCCTCTGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTATGTTGCAGCCGGCCAGGCACTCCAAGCTTGAGAAGGCCGACAAACTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACTGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACACTACCACTAAATACATTGCTTGTGATGCAGCCGGCCAGATATTCCAAGCTGGAGAAGCCGACATCCTGGAGATGA
- Protein Sequence
- MRCSDCSYFATQDPARHSKLEKADILEMRVKHLQTILRQQLSPPSSATLTLHTPLMLQPDRHSKLEKADILEMTVKHLQTILRQQLSPPSSATLPLHTPLVMQPARHSKLEKADILEMTVKHLQTILRQQLSPPSSATLPLHTPLVLQPARHSKQEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKQEKADILEMTVKHLQTILRQQLSPPSSATLTLHTPLVLQPARHSKQEKADILEMTVKHLQTILRQQLSPPSSATLTLHTPLMLQPARHSKLEKADILEMTVKHLQTIQRQPLSPPSSATLTLHTPLVLQPARHSKQEKADILEMTVKHLQTILRQQLSPPSSATLTLHTPLVLQPARHSKQEKADILEMTVKHLQTIQRQPLSPPSSATLTLHTPLMLQPARHSKLEKADILEMTVKHLQTIQWQQLSPPSSATLTLHTPLVLQPARHSKLEKADTLEMTVKHLQTIQRQQLSPPSSATLTLHTPPVLQPARHSKLEKADTLEMTVKHLQTIQWQQLSPLSSATLTLHTPPVLQPARHSKLEKADTLEMTVKHLQTIQWQQLSPPSSATLTLHTPLVLQPARHSKLEKADTLEMTVKHLQTIQWQQLSPLSSATLTLHTPLVLQPARHSKLEKADTLEMTVKHLQTIQRQQLSPPSSATLTLHTPLMLQPARHSKLEKADKLEMTVKHLQTIQRQQLSPPSSATLTLHTLPVLQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLPLNTLLVMQPARYSKLEKPTSWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -