Fatl005686.1
Basic Information
- Insect
- Flexamia atlantica
- Gene Symbol
- -
- Assembly
- GCA_035578135.1
- Location
- JAQJVK010000001.1:79964903-79968395[+]
Transcription Factor Domain
- TF Family
- bHLH
- Domain
- HLH domain
- PFAM
- PF00010
- TF Group
- Basic Domians group
- Description
- A basic helix-loop-helix (bHLH) is a protein structural motif that characterizes one of the largest families of dimerizing transcription factors.It should not be confused with the helix-turn-helix domain.The motif is characterized by two α-helices connected by a loop. In general, transcription factors including this domain are dimeric, each with one helix containing basic amino acid residues that facilitate DNA binding. In general, one helix is smaller, and, due to the flexibility of the loop, allows dimerization by folding and packing against another helix. The larger helix typically contains the DNA-binding regions. bHLH proteins typically bind to a consensus sequence called an E-box, CANNTG. The canonical E-box is CACGTG (palindromic), however some bHLH transcription factors, notably those of the bHLH-PAS family, bind to related non-palindromic sequences, which are similar to the E-box. bHLH TFs may homodimerize or heterodimerize with other bHLH TFs and form a large variety of dimers, each one with specific functions.https://en.wikipedia.org/wiki/Basic_helix-loop-helix
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0016 2.4 10.3 0.1 31 53 4 26 1 26 0.89 2 23 6e-06 0.0093 18.1 0.2 27 53 45 71 35 71 0.80 3 23 1.4e-05 0.022 16.8 0.1 30 53 93 116 82 116 0.87 4 23 1.2e-05 0.019 17.1 0.2 29 53 137 161 127 161 0.87 5 23 0.017 26 7.0 0.2 23 50 175 203 170 206 0.76 6 23 0.0019 3 10.0 0.5 29 53 227 251 204 251 0.84 7 23 0.002 3.1 10.0 0.2 29 53 272 296 262 296 0.86 8 23 0.00025 0.39 12.9 0.1 29 51 317 339 307 341 0.86 9 23 2.5e-05 0.038 16.1 0.3 29 51 362 384 350 386 0.81 10 23 0.0011 1.7 10.8 0.2 29 53 407 431 395 431 0.81 11 23 0.00025 0.39 12.9 0.1 29 51 452 474 442 476 0.86 12 23 6.5e-06 0.01 17.9 0.2 29 53 497 521 485 521 0.81 13 23 1.8e-05 0.028 16.5 0.3 29 53 542 566 532 566 0.87 14 23 1.7e-05 0.026 16.6 0.2 29 53 587 611 577 611 0.87 15 23 0.013 20 7.4 0.1 29 45 632 648 622 651 0.85 16 23 0.0065 9.9 8.4 0.1 31 46 650 665 648 674 0.76 17 23 1.3e-05 0.021 17.0 0.2 30 53 696 719 685 719 0.87 18 23 2e-05 0.031 16.4 0.1 30 53 741 764 730 764 0.87 19 23 2e-05 0.031 16.4 0.1 30 53 786 809 775 809 0.87 20 23 1.5e-05 0.024 16.8 0.1 30 53 831 854 820 854 0.87 21 23 0.0024 3.7 9.7 0.1 30 53 876 899 865 899 0.87 22 23 1.4e-05 0.022 16.9 0.1 30 53 921 944 910 944 0.87 23 23 6.8e-05 0.11 14.7 0.1 34 53 970 989 957 989 0.87
Sequence Information
- Coding Sequence
- ATGCAGCCGGCCAGGCACTCCAAGCTTGAGAAGGCCGACAAACTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCAACATTAACACTACATACACTGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAACAGCTCAGCCCTCCATCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAACAGCTCAGCCCTCCATCGTCCGCTACATTAACACTACATACATTGCTTGTGTTGCAGCCGGCCAGACACTACAAGCTGGAGAAGGCCGACATCCTGGAGACGATGGTGAAGCACCTGGAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGACGATGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGTCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGACGATGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGTCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGACCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTACCACTACATACATTACTTGTGATGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGAAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTACCACTACATACATTACTTGTGATGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGACGATGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGTCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGACCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCTGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTACCACTACATACCTTGCTTGTGATGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGTCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGAAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAACAGCTCAGTCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTGTGTTGCAGCCGGCCAGGCACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAACAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCTTATGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACACCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCCTGTGATGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCCTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGACGATGGTGAAGCACCTGCAGACCATCCAGCGACAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGTTTGTGTTGCAGCCGGCCAGACACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGACAGCAGCTCAGCCCTCCGTCGTCCGCTACATTAACACTACATACACCGCCTGTGTTGCAGCCGGCCAGATACTCCAAGCTGGAGAAGGCCGACATCCTGGAGATGACGGTGAAGCACCTGCAGACCATCCAGCGGCAGCAGCTCAGCCTGGCCGCTAGCGCCGACCCCTCCGTCGTCCGCAAGTTCCAGTCTGGCTACACCGAGTGCGCCGGCGAGATATTAGTCGTTTCTAATTTCGATTCCTTTTTTTTCCTGGGGAAAATCAATCTAAGGAACGGACAAATATTTCTGTTTTCGGACATAATATAG
- Protein Sequence
- MQPARHSKLEKADKLEMTVKHLQTIQRQQLSPPSSATLTLHTLPVLQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTPPVLQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTLLVLQPARHYKLEKADILETMVKHLETILRQQLSPPSSATLTLHTPLVLQPARHSKLEKADILETMVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKLEKADILETMVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKLEKTDTLEMTVKHLQTILRQQLSPPSSATLPLHTLLVMQPARHSKLEKADILKMTVKHLQTILRQQLSPPSSATLPLHTLLVMQPARHSKLEKADILETMVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKLEKTDTLEMTVKHLQTILRQQLSPPSSATLPLHTLLVMQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKLEKADILKMTVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKLEKADTLEMTVKHLQTIQRQQLSPPSSATLTLHTPLVLQPARHSKLEKADILEMTPARHSKLEKADILEMTMTVKHLQTIQRQQLSPPSSATLTLHTPLMLQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTPPVLQPARHSKLEKADTLEMTVKHLQTIQRQQLSPPSSATLTLHTPPVLQPARHSKLEKADTLEMTVKHLQTIQRQQLSPPSSATLTLHTPPVMQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTPPVLQPARHSKLEKADILETMVKHLQTIQRQQLSPPSSATLTLHTPFVLQPARHSKLEKADILEMTVKHLQTIQRQQLSPPSSATLTLHTPPVLQPARYSKLEKADILEMTVKHLQTIQRQQLSLAASADPSVVRKFQSGYTECAGEILVVSNFDSFFFLGKINLRNGQIFLFSDII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -