Fyps010928.1
Basic Information
- Insect
- Fissipunctia ypsillon
- Gene Symbol
- -
- Assembly
- GCA_947568875.1
- Location
- OX387647.1:389543-390676[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.02 79 3.8 0.0 6 23 26 43 22 49 0.88 2 10 0.0098 40 4.7 0.0 7 23 62 78 56 86 0.88 3 10 0.01 42 4.7 0.0 7 23 97 113 92 118 0.88 4 10 0.01 42 4.7 0.0 7 23 132 148 127 151 0.87 5 10 0.0015 6.2 7.3 0.0 6 23 166 183 162 191 0.87 6 10 0.0048 20 5.7 0.0 6 23 201 218 197 224 0.88 7 10 0.0079 32 5.1 0.0 7 23 237 253 234 260 0.88 8 10 0.011 44 4.6 0.0 7 23 272 288 266 292 0.88 9 10 0.0067 27 5.3 0.0 6 23 306 323 302 331 0.88 10 10 0.046 1.9e+02 2.6 0.0 7 23 342 358 336 363 0.87
Sequence Information
- Coding Sequence
- ATGCGAACAGTTGTCCCGCGACACCAACCGGTTGGATACGAACAGTTGTCCCGCGACACCAACCGGTTGGATACGAACAGTTGTCCCGCGACACCAACCGGTTGGATGCGAACAGTTGTCCTGCGACACCAACCGGTTGGATGCGAACAGTTGTCCCGCGACACCAACCGGTTGGATGCGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGAACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACCGGTTGGATTTGAACAGCTGTCCCGCGACACCAACCGGTTGGAAACGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGAACAGTTGTCCCGCGACACCAACCGGTTGGATGCGAACAGTTGTCCCGCGACACCAACCGGTTGGATACGAACAGCTGTCCCGCGACACCAACCGGTTGGAAACGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACATTTGTCCCGCGACACCAACCGGTTGGATACGAACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACTGGTTGGATACGAACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGAACAGCTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCAACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACTGGTTGGATACGTACAGTTGTCCCGCGGCACCAACCGGTTGGATACGAACAGTTGTCCCGCGACACCAACCGGTTGGATACGTACAGTTGTCCCGCGACACCAACCGGTTGGATACGAACAGCTGTCCTGCGACACCAACCGGTTGGATACGTACAGCTGTCCCACGACACCAACCGGTTGGATACGAACAGCTGTCCCGCGACACCAACCGGTTGGATACGAACAGCTGTCCCTCGACACCAACCGGTTGGATACGAAATTATGA
- Protein Sequence
- MRTVVPRHQPVGYEQLSRDTNRLDTNSCPATPTGWMRTVVLRHQPVGCEQLSRDTNRLDAYSCPATPTGWIRTVVPRHQPVGYVQLSRDTNRLDTYSCPATPTGWIRTVVPRHQPVGFEQLSRDTNRLETYSCPATPTGWIRTVVPRHQPVGCEQLSRDTNRLDTNSCPATPTGWKRTVVPRHQPVGYVQLSRDTNRLDTYICPATPTGWIRTVVPRHQPVGYVQLSRDTNWLDTNSCPATPTGWIRTVVPRHQPVGYEQLSRDTNRLDTYSCPATPTGWIRTVVPRHQLVGYVQLSRGTNRLDTNSCPATPTGWIRTVVPRHQPVGYEQLSCDTNRLDTYSCPTTPTGWIRTAVPRHQPVGYEQLSLDTNRLDTKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -