Fcup014589.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754959.1:105987291-105988778[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.17 1.4e+03 0.3 0.0 22 43 214 235 209 240 0.81 2 7 0.0026 22 6.1 0.1 21 49 241 268 235 271 0.86 3 7 0.0023 19 6.3 0.2 21 48 296 323 275 327 0.84 4 7 0.00033 2.7 9.0 0.1 21 45 324 348 320 355 0.89 5 7 0.0027 22 6.1 0.1 18 47 376 406 366 412 0.81 6 7 0.0019 16 6.6 0.0 23 45 438 460 434 464 0.89 7 7 0.003 25 6.0 0.3 21 48 464 491 461 494 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGCGAAATGACACAAATCGAATTCTCCGATATGGTCAAGGACGGCAACTGCACCTTTTCTGATTGGCCAGACGAGGAAGAAGACGGCGATGAGGATATCACTGAAGTTCTCCTGACCGAGGATATGATAAAACAGGAGCCCGAATTTATAATCGACTCAACCGACATCAAGGAGGAGCAGAAGATTCGTTCTTTCCTCAAAAAGGTCAACATTGACGATGAGGAGAGACAGAAACTAAACTGGCTTCCGTGCATGTTGTGCGACGAGCGTTTTTTACTCACCAAAGAATTGTCCCTTCATGTGCAAGGACACGCGAACGCATCATTAAAGGCGGAAGAAAATATTCATCCTCCGAAAGAGCTCACGAATCGGCAGGCGCCTAAAACTTCTTACACAGGCTTTACAAAGCAGGAACTTTTTCAGGACTATATAAACATTAGTGTCGAGTTAGACGGGAAGCCGACATACACCTGTAAACTGTGCCCCAACAAGGTGTACGCGCGTCAAGTGTCCATACGAAACCATATGCGCATCCATGAGAACCCAACATACAAGGAACGCTCATGCCATGTCTGTCAAAAGACATTTCTGCGGCGAGACACACTCCTAGTGCACCTGCGCATCCACAGCGATGAGCGGAACTATAAGTGCGACATATGCGAGGCTACCTTCTCACATTCCAGTTCTCTTGTTTCGCACAAGCGCATCCACACCGGCGAGAAGCCATACGTCTGCGAGATCTGCTCGAAATCCTTCCGCGAGTCTGGTCAATTAACCGCCCACAAGAAGATTCACTTCGAGAAGTTACTGCAATGCCCCAAGTGCGAGAAGAAATTCACATCTAACAAGACGCTTCGCGTGCACTGCCGAACACACACTGACGAGCGCCCGTACGCATGCACCTTCTGTGGAAAAATGTTCCGTTGCAGCACAAGCCTGACAACGCACTTACGAGTCCACACCGGCGAGAAGCCCTACAAGTGCGAGATCTGCTCGTACGCGACCAAGCAATCTGGCTATCTACGCACTCATATGCGGACGCACACGGGCGAAAGGCCCTACAAGTGTCTGTACTGCGAAAAGGCCTTCTCCGAGAAGAAGCGCCTAGTCACCCACACTCGCAGCCATACAGGTGAACGCCCGTATAAGTGCATCTACTGCGATGCGGCATTTGCACGCAACGACAACCTCAAGTATCACCTGCGGACCCACACCGGCGAAAAAccgtacgagtgcgcagactgTGGCAAGAGATTCGCACAGGGCACTGCGCTCAGTATTCACCAAAAGATTCACACCGGAGTTAAGCCGTATTCGTGCCCGCACTGTGACATGAAATTCCGTCAGAGTGGGACTCTGGTCACCCATTTGCTGATGCACACCAACGAACGACCATTTAAGTGTGATCTCTGCGAGCGTGGATTCCGGCAAAGAGCACTGCTAAAGCGGCATGTTGCCAGCGCTCATGCGAGCAGGATGTAG
- Protein Sequence
- MAGEMTQIEFSDMVKDGNCTFSDWPDEEEDGDEDITEVLLTEDMIKQEPEFIIDSTDIKEEQKIRSFLKKVNIDDEERQKLNWLPCMLCDERFLLTKELSLHVQGHANASLKAEENIHPPKELTNRQAPKTSYTGFTKQELFQDYINISVELDGKPTYTCKLCPNKVYARQVSIRNHMRIHENPTYKERSCHVCQKTFLRRDTLLVHLRIHSDERNYKCDICEATFSHSSSLVSHKRIHTGEKPYVCEICSKSFRESGQLTAHKKIHFEKLLQCPKCEKKFTSNKTLRVHCRTHTDERPYACTFCGKMFRCSTSLTTHLRVHTGEKPYKCEICSYATKQSGYLRTHMRTHTGERPYKCLYCEKAFSEKKRLVTHTRSHTGERPYKCIYCDAAFARNDNLKYHLRTHTGEKPYECADCGKRFAQGTALSIHQKIHTGVKPYSCPHCDMKFRQSGTLVTHLLMHTNERPFKCDLCERGFRQRALLKRHVASAHASRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_00241666;
- 80% Identity
- iTF_00724958;