Fcup019961.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754960.1:75165540-75169326[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00044 3.6 8.6 0.1 16 49 50 83 44 86 0.79 2 7 5.4e-05 0.44 11.5 0.2 21 51 83 113 80 115 0.92 3 7 0.0069 57 4.8 0.0 23 44 142 163 136 167 0.91 4 7 5.7e-05 0.47 11.5 0.2 25 54 172 200 164 201 0.85 5 7 0.0097 80 4.3 0.1 26 48 201 223 194 229 0.87 6 7 0.00075 6.2 7.9 0.0 20 45 277 302 270 310 0.84 7 7 0.47 3.9e+03 -1.1 0.0 21 34 306 319 302 336 0.67
Sequence Information
- Coding Sequence
- atgaacGAAGACATTGGTGCAATGAAAAGATCTGATTCCAAAGACGACGCTAGCAGTTCGTTAAGGGACAGTGGTATATCAATATCTGAAGGACTCTCTGAAAGTGAACACGAGTTCGATGAAAATGCctcgaagaaaaagaaaatgaagatAAGGAAAAATGCGGCcaggagtaagaaatgtcatatcTGTGTGAGAACATTCAAGAATGGCACTGACCTACGACGTCATCTTCTCATTCATACAAATGAAAAACCTCACGAATGCGAAATATGCAAAAAATCGTATCggcaagaaataaatttaaataaccaCATCATAATGACGCACACAAATAAAAGAGATTTCAAATGTCAATTCTGCAGAAAGGCGTTCGGTTTAAAGACGCATTTAAAATATCATTTGCGGATTCACACCGGAAAAGAACCTTATTCGTGTCCTCACTGTGACATGAAGTTTGCTCAAGCCGGACAActtGAAAGGCATTTGGTTTCTCACGCAGAACGGGAAAAGAAATGTTGTGAACTTTGTTTTACTACATTTACCAGTCAACGAAATTTACGAATACATATGGAACGTCATGAGCAGGGGCCAGGCATTGTATGTAACATATGCACCAAAATATTCAagaatgatttaattttaaaaactcatCTGAGATTGAACCATGGAAAGGTTAAACCTGAATGTCAGATATGTGAGTTGACTGTGGAAGGCGACATGCACACACATATGAAAACTCATTTTCCAGACAAGTCAATTGAGTGTGAAGTGTGTCATGTTGCATTTGCTTCAAAGGCTCAGTACAATGTTCATAAGAGAAAACATACGGGAGAAAAGCCGTTTACGTGCAAGGTTTGCTGGCGAAGCTTTGGACATAACAACGTTCTCAAACGCCACATTAGAAAACACACTGGAGAAAAGCCTTTTAAATGCGTCTTGTGCGATACAGTATCCACTTCATTCTCTCAGTTATGTCACTTGAAAACTCATATGAAAACAATGCATAAAAAGGATAAAACCTACGTTTGCGAGGGATGCAAAGAATCTTTCAAAGTTAAGTTTCAACTCGACAGACACCAAGAATTTTGCGAGAAAACCCCTCCGCCAAATGGATTTGACGATcttgagttggaaaaaaaacaaaaagatgctGAACTTCTATCTCGTTTAAGGTATCTTGTAGCAGTGCTAGTAAAGAAACTATCAACCGAAGAAAAACTTCAAGCGTTGGGCTTTGATAAACGCCTTATAGATAATGTGCTTATTGCTTCACTGAAAGTTGCAAATCAAAAATGCTATCAAAGTAAGAAAATGGACGAACTCGATCGAATGAAATTGAACATACACGAATTTTTGGAATGGATTGTTCCTGCAAATGTATTAGATGCATTTAAAAAGGAATGTTCATCTATTGAGGGTATCTTAGATATGATTGTAACAATGTATTTGAAGCAACAACAAGCCTTATAA
- Protein Sequence
- MNEDIGAMKRSDSKDDASSSLRDSGISISEGLSESEHEFDENASKKKKMKIRKNAARSKKCHICVRTFKNGTDLRRHLLIHTNEKPHECEICKKSYRQEINLNNHIIMTHTNKRDFKCQFCRKAFGLKTHLKYHLRIHTGKEPYSCPHCDMKFAQAGQLERHLVSHAEREKKCCELCFTTFTSQRNLRIHMERHEQGPGIVCNICTKIFKNDLILKTHLRLNHGKVKPECQICELTVEGDMHTHMKTHFPDKSIECEVCHVAFASKAQYNVHKRKHTGEKPFTCKVCWRSFGHNNVLKRHIRKHTGEKPFKCVLCDTVSTSFSQLCHLKTHMKTMHKKDKTYVCEGCKESFKVKFQLDRHQEFCEKTPPPNGFDDLELEKKQKDAELLSRLRYLVAVLVKKLSTEEKLQALGFDKRLIDNVLIASLKVANQKCYQSKKMDELDRMKLNIHEFLEWIVPANVLDAFKKECSSIEGILDMIVTMYLKQQQAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00724997;
- 90% Identity
- iTF_00724997;
- 80% Identity
- iTF_00724997;