Basic Information

Insect: Ferdinandea cuprea
Gene Symbol: -
Assembly: GCA_963576555.1
Location: OY754958.1:168439516-168442730[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00015 0.023 16.0 1.1 2 23 392 413 391 413 0.97

2 16 1.3e-05 0.0019 19.4 1.1 1 23 419 441 419 441 0.98

3 16 9.1e-05 0.014 16.7 0.3 1 23 447 470 447 470 0.98

4 16 3.3e-05 0.0049 18.1 3.5 1 23 485 507 485 507 0.98

5 16 8.7e-05 0.013 16.7 0.2 1 23 540 562 540 562 0.97

6 16 6.9e-05 0.011 17.0 1.8 1 23 568 590 568 590 0.98

7 16 7e-06 0.0011 20.2 1.3 2 23 705 726 704 726 0.97

8 16 4.1e-06 0.00062 20.9 1.4 1 23 732 754 732 754 0.98

9 16 0.0005 0.076 14.3 0.6 1 23 760 783 760 783 0.97

10 16 0.00017 0.025 15.8 1.2 1 23 794 816 794 816 0.98

11 16 2.3e-05 0.0035 18.5 1.1 1 23 828 850 828 850 0.98

12 16 0.015 2.3 9.7 1.8 1 23 856 878 856 878 0.97

13 16 2.1e-05 0.0031 18.7 0.3 2 23 884 906 883 906 0.95

14 16 0.063 9.6 7.7 1.2 1 23 914 937 914 937 0.95

15 16 0.0043 0.66 11.4 0.2 3 23 947 968 946 968 0.94

16 16 0.00055 0.083 14.2 1.3 2 23 974 995 973 995 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00015	0.023	16.0	1.1	2	23	392	413	391	413	0.97
2	16	1.3e-05	0.0019	19.4	1.1	1	23	419	441	419	441	0.98
3	16	9.1e-05	0.014	16.7	0.3	1	23	447	470	447	470	0.98
4	16	3.3e-05	0.0049	18.1	3.5	1	23	485	507	485	507	0.98
5	16	8.7e-05	0.013	16.7	0.2	1	23	540	562	540	562	0.97
6	16	6.9e-05	0.011	17.0	1.8	1	23	568	590	568	590	0.98
7	16	7e-06	0.0011	20.2	1.3	2	23	705	726	704	726	0.97
8	16	4.1e-06	0.00062	20.9	1.4	1	23	732	754	732	754	0.98
9	16	0.0005	0.076	14.3	0.6	1	23	760	783	760	783	0.97
10	16	0.00017	0.025	15.8	1.2	1	23	794	816	794	816	0.98
11	16	2.3e-05	0.0035	18.5	1.1	1	23	828	850	828	850	0.98
12	16	0.015	2.3	9.7	1.8	1	23	856	878	856	878	0.97
13	16	2.1e-05	0.0031	18.7	0.3	2	23	884	906	883	906	0.95
14	16	0.063	9.6	7.7	1.2	1	23	914	937	914	937	0.95
15	16	0.0043	0.66	11.4	0.2	3	23	947	968	946	968	0.94
16	16	0.00055	0.083	14.2	1.3	2	23	974	995	973	995	0.97

Sequence Information

Coding Sequence: ATGTCTGTCAAGCTGGATGATACGGTGTGCCGCGTTTGTTTGAGTTCCTCGGGCAACATATCAATCTTTGATGGATGCGGCAAGGATGATCAATTTCGCTATTGCACTTCTTTGGAGGCCGCCGTGAACGATGGACTTCCATCTAAGCTGTGCAAGAAGTGCAATGACCATTTGAAGGTTGCCTACGATTTTCGTTTCCAAGCAATCTATGCTgagaaatattttcgaaaaaccaTATTCCTTCCATCGTTAAAAAAGGAAGCGAATGAAACGATTACGAATATTTCAGACGAGCATCGCAACTGCACAGATGAGCTGGACGAGAACATGGCTGAGATTGACATGTTGCTGGCAATACACACGGAGTCTGTGGAAGAGGCAGGCGATGGCGATACCGATGATTTGACTAATTCGGGATTCTACGACGATGATGAGAGTGTGGGTGAGAATGACAAACAGGTGGAAGTCCTTGGCATGGACACGTTTGACAAGGAAAAGCACGAACAAAAGAAGCAACAAGTTAAAATCGAAATTGCCAACGTTCCCCCGCCATTGGTGTCATCTTCGGCGGCAAATTCAGGGTATGTTAATTCAATACCCATGGTTCAGTTGCCAATGGATTCACCGCAATCCACCACAAGCAATAATAGTGTGGTGCCAAATATGGATATGAATGCACTTCCGCAGTATGCGACACCGAGTGCTTACTCCACGCAGTCTACTCAAGATATTCGCATGGACCAAAATCGGTCTTTGCAATTAGAAATTCTTCCAATTTTGAAAAACGATCCGACTACATACGACTACAGCGCCAGCACTACTAATGTTGGCGAGACCTTTGAGGCCTACAGTGCGACTACGCACATGCAGCAGTACCAGCAGCAAATGCCGATGCATCTGCAATACGAACAACAGTCTGCGTCTTTGCCAACACACGAATCCGCTCCTGCTGCGGAGAGCTATGACTTCGCGTATCAACCACCGTTCCCACCATACGCCTCGCAGAGCAACGGAATACGACCCGAGGATCAGGTAATCGCCACCGATCATCAGTTGAACCAGGTCGTTGCAGTTGCAACTGAAATCGAGCCCGAAAACACAACAAAGACTGAAAATCTTAAATCCAAGCCAACAAAGGTTAAGCGAGAAACACCCGGTCGCAGAGAGAAGATCGAGTGCAATATCTGTGGTAGCATCTTCACGCATTTGAACTCGCTGAAGACCCATCTCCTAAAGCACTCGGGAGAGAAACCTTTCAAATGCGAGTTTTGTGACAAAGCGTTCGCAAGAAAGACTGTCCTCAACATTCATCGACGGCTGCATACCGGCGAAAAGCCCTACAAATGTTCCCTATGTCCAAGTGCCTATGTAACTAAAGAAGCTCTAACGCGTCATCTTCAAAAGGATCATGAACAGGAAGTGGGAGTGAATTTCCGCAAGGATAAGGTCTCCTATATATGCTCGATTTGCAACAAGTCACGCTGTTCCAAGTATTCGCTCGCGTCGCACATGAAGACGCACACAAATGATGCCAGATCGCGGCGGAAAGTCGTCCGGCGGAAAAAAGAAAAGTCTGACGGATGTAATGGTATCGTTTCGAATCGTGTTCCTTTAAAGTACTCGTGTAAGGTCTGTCAGAAGGGCTTCCCTAACAAATGGGAACTTAGCACGCACGCCGAATCCCATGACATGAACAAGACCTTCGAATGCGACGTCTGTCAGCGAACATTCGAAAAAAAGTTCCAGTTGTTGTACCACCTGCAGACGCACGATGGCGGCGATGAGCTTGTAAAAGCAAAGGTCAAACCCAGCTCTGAAATACCAGCAAAAACTAAGGCAGGTGTTGCACCGAAAAAAGACGATCAAAAGCCAACGGTTGTCGAGAAGAAATTGAAAAGAGTGCTTTCCTCGCGAAAGCggagaaaaagaaaagtaaaaatcgTTAATAACGACAGCGATGAAGGAGATGAAGCACCAGAAAAGGAAGAAAAtgaggacgacgacgatgacaaagATTTCAAGCCTGCAAAGACGGCAGAAAACTCCCTGAAAAAAAGGACAACTCGTGCACAGCGCGAGAACCTTAAGATACTTCGAGCCAGTAGCAAGATTGAATGCCACATTTGCCAGGCAGTATTCACGCATCCGACATCGCTTAAAACGCACATGCTGGTGCACTCGGGCGAGCGGCCATTCAAATGCGACAATTGCGACAAGTCTTTTGCACGAAAAACCGTTCTCAACATCCATCGACGGCTGCACACTGGCGAAAAGCCTTACAAGTGTCCGCTCTGTGCTAGTGCCTGCGTAACGAAGGATGCTCTGATGcgCCACATGTCAAAAGACCACGACGATGACAGGGAAGCTGATCGAATCAAGTTCACTTGCGGCATCTGTCACAAAGCGATGGGCACCAAGTACTCCCTTCAAGCCCACATGAAGCTCCACGAACAGTACTCCACCGCGGAGACTGAGGTCAAGTTTTCTTGCAACACCTGTACTGAGTCATTTGACAACAAATCAGACTACTCGCAGCACATGGAGGTGCACGATTCGCACCGTAACTTCCAATGTGACATTTGTCAGGCCACATTCGAGAAGAAATTCAAACTGCTCTTCCACTTACAGACGCACAAAATCGAGGACTTGCCATGCAAAAAGTGTGGCGAGACATTCACAATAAGagaaAATCTCATACAACACATCAAGCTGCAACATATGGATCCTCGTAATATGGACTTCCAGTGTCCGCACTGCAATATCGGACAATACGATACCCGTGATCTGAAGCTGCACATGCTTAATACCCACGAAGTAACTATGGGCGGTCTTAATGCCTGCGATCTGTGCGGCGAAAGCTATTTTACCGCAGCCGAGTACTACAAACATATGCACGAAATACATGACACAATCAGCAAAACATGCAACGAATGCGAGAAGTATTTCGACTCGAGAAAAGCATTCGATAAGCACATATTGACACACTACATGTAA
Protein Sequence: MSVKLDDTVCRVCLSSSGNISIFDGCGKDDQFRYCTSLEAAVNDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSLKKEANETITNISDEHRNCTDELDENMAEIDMLLAIHTESVEEAGDGDTDDLTNSGFYDDDESVGENDKQVEVLGMDTFDKEKHEQKKQQVKIEIANVPPPLVSSSAANSGYVNSIPMVQLPMDSPQSTTSNNSVVPNMDMNALPQYATPSAYSTQSTQDIRMDQNRSLQLEILPILKNDPTTYDYSASTTNVGETFEAYSATTHMQQYQQQMPMHLQYEQQSASLPTHESAPAAESYDFAYQPPFPPYASQSNGIRPEDQVIATDHQLNQVVAVATEIEPENTTKTENLKSKPTKVKRETPGRREKIECNICGSIFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGVNFRKDKVSYICSICNKSRCSKYSLASHMKTHTNDARSRRKVVRRKKEKSDGCNGIVSNRVPLKYSCKVCQKGFPNKWELSTHAESHDMNKTFECDVCQRTFEKKFQLLYHLQTHDGGDELVKAKVKPSSEIPAKTKAGVAPKKDDQKPTVVEKKLKRVLSSRKRRKRKVKIVNNDSDEGDEAPEKEENEDDDDDKDFKPAKTAENSLKKRTTRAQRENLKILRASSKIECHICQAVFTHPTSLKTHMLVHSGERPFKCDNCDKSFARKTVLNIHRRLHTGEKPYKCPLCASACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQYSTAETEVKFSCNTCTESFDNKSDYSQHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPRNMDFQCPHCNIGQYDTRDLKLHMLNTHEVTMGGLNACDLCGESYFTAAEYYKHMHEIHDTISKTCNECEKYFDSRKAFDKHILTHYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01254219;
90% Identity: -
80% Identity: -