Fcup009778.1
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754959.1:10291102-10292818[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-07 0.00015 22.2 0.0 2 40 15 53 14 56 0.89 2 2 3.4 2.4e+03 -0.8 0.1 2 12 219 229 218 231 0.86
Sequence Information
- Coding Sequence
- ATGCCTCGCAGCAAGGAAGGTGTTAAAAGAACTCCTTTGGATGAAAATGCCATACAGGAAGCTATCAACAATGTTCTCTACAATAAGGAAACAATCGGCAGAGCTGCAAAAGACCACGGTATTTCCAAAACAACTTTGTTTCGTCATCTTCAAATGCATCGGAAATCTGGCGATGCAACGTTCAAATACCATTCAGAAATTGCACACAAAAAAGTGCTTAATGATGAAGAAGAACTTGCCTTGGTTGAATACCTTACCACAGCAGCAAAGCTGCAGTATGGGTTAACGAAAATTGATACAACCAAATTGGCCTTTAGTTTTGCAAAAGCAAATGGAACAATTCTTCCGGAGTCGTGGATAAAGAACGAAGCAGCTGGCAAAGAGTGGATGATTGGCTTTCTTAAACGGCACCAAACCTTATCACTCAGAAAGCCAGAGTCGACCAACCTTTCCAGATCAACCAGTTTTAACCGCTGCAATGTGGGACAATTTTTTACCAATTTGGAAGATTGCTATTCCCGTTTTAAATTTTACCAAAGTAGAATTTACAATCTTGACGAAACTGGAAATTCAACGGTTCACGTCCCACCGAAAGTTTTAGCTGCCAAAGGTGAAAAACAAATAGGAAGCATGACCTCGGGAGAAAGAGGAATAAATGCCACTATGGTCGCGGCTATTAATGCAATAGGAAATCATGTTCCGCCGATGTTGATATTCCCCAGAGTTCATTTCAAGGAAAATATGCTTAACGGTGCTCCAGCAGGGTGTATGGGTGGTGCTAATACTTCCGGCTGGTCAAACGAGCAACTGTTCATTGAGTTCTTCGTACATTTTATAGCACATTCAAAGCCAACACCAGATGAAAAAGTTTTGCTTATAATGGACAACCATGATAGCCACATATCTCTGCAGGCCATTGATCTCGCCAGAAAACATGGAGTTGTTCTTTTGACTCTGCAGCCGCATACTTCCCACAAAATGCAGCCTCTGCATAGAACGGTATTTGGACCGTACAAAACTTACTACAACAAAGCCGCAAGTGAATGGATGCTGAACAACCCAGGAAAACCAATGTCAATTTACAATGTAGCACAAATTGTCGGCCAGGCTTATCCGAAAGCATTCAATCAGCAAAACAtcgttaaaggatttaaagtaaCAGGAATATATCCCTTCAATCACGATATTTTCAATGAAGATGAATTCCTTAGTAGCTTCGTAACGGATCGACCATATGAACAAAGACCAGGAACATCCACAGCGACCTCTGCAGTATTGGTTCCTTCGATAAATTTCGTATCACCAGAGCAAATAAGGCCATTTCCAAAAGCTGCACCAAGAAAGGATCCTATTGCACGTGGAAGAAAGAGGGGAAGAACTAGGATTCTTACGGACACTCCTGAGAAGGAAGAAATTACTACAGGAAGCTCGAAAGTCAAGACCACTAAAAAGCCAAATTCAGcgaagaaaaaagttttaaacgaGTCCTCAGACGATGATGAAACTTTTGAGCTGCCGGTGATTCCACGAATTCCTAAATTCAGACATGTGAAAGCAAATACCACGCCAATAGAAAATAGGAGCGACGAGGACTTCAGCGGTGATAATGAAATGACTATCGAAGAAATTTTCCAGTTAGCAAGAGGCAAGAAGGTTTAA
- Protein Sequence
- MPRSKEGVKRTPLDENAIQEAINNVLYNKETIGRAAKDHGISKTTLFRHLQMHRKSGDATFKYHSEIAHKKVLNDEEELALVEYLTTAAKLQYGLTKIDTTKLAFSFAKANGTILPESWIKNEAAGKEWMIGFLKRHQTLSLRKPESTNLSRSTSFNRCNVGQFFTNLEDCYSRFKFYQSRIYNLDETGNSTVHVPPKVLAAKGEKQIGSMTSGERGINATMVAAINAIGNHVPPMLIFPRVHFKENMLNGAPAGCMGGANTSGWSNEQLFIEFFVHFIAHSKPTPDEKVLLIMDNHDSHISLQAIDLARKHGVVLLTLQPHTSHKMQPLHRTVFGPYKTYYNKAASEWMLNNPGKPMSIYNVAQIVGQAYPKAFNQQNIVKGFKVTGIYPFNHDIFNEDEFLSSFVTDRPYEQRPGTSTATSAVLVPSINFVSPEQIRPFPKAAPRKDPIARGRKRGRTRILTDTPEKEEITTGSSKVKTTKKPNSAKKKVLNESSDDDETFELPVIPRIPKFRHVKANTTPIENRSDEDFSGDNEMTIEEIFQLARGKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00240645;
- 90% Identity
- iTF_00240646; iTF_01520963; iTF_01520964; iTF_01520966; iTF_00240652; iTF_00724717; iTF_00240645; iTF_00724726;
- 80% Identity
- -