Eads008967.1
Basic Information
- Insect
- Exocentrus adspersus
- Gene Symbol
- -
- Assembly
- GCA_029955175.1
- Location
- JANEYG010000021.1:1130153-1132032[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 6.1e-07 0.0061 17.4 0.0 21 49 256 284 251 289 0.91 2 7 0.44 4.4e+03 -1.4 0.1 22 45 331 354 308 358 0.67 3 7 0.003 30 5.6 0.0 21 44 358 381 349 387 0.91 4 7 0.026 2.6e+02 2.6 0.2 26 46 422 442 414 450 0.84 5 7 0.11 1.1e+03 0.5 0.0 21 43 445 467 434 471 0.81 6 7 0.0053 53 4.8 0.0 11 48 462 500 456 502 0.82 7 7 1e-05 0.1 13.4 0.2 21 48 502 529 498 531 0.89
Sequence Information
- Coding Sequence
- atggataattataaatatatggaTATCTCTATTaacgatttttcaaaaatatgcagGGTCTGTTTATTGCCCAATATCGTCTTATTTGACGCAATTGAATTACTAAATTTTTACTCAAAAGTAATTGGCATCGAGgtgAACCAAGACGATGGGCTCCCTAAAAATATATGCGACAGTTGTGGAATAGAACTAAGAAAAGTGGCATGTTTCATTGACAAATGTAAAGAAAACGACAGGTTTCTAACAGCTATCTTAATACAGTCCAAGAAAGATAATTCTAGTCCTAGTTGTGATGCGCCAGATTATGAATCTGACGCACCATTTTCCACGTGCGGGGAACCCACGATTAAATTGGAAAATGAGGCTTGTAGTAATAATAACATGGAACCTCCCGAACCTCTCTTCAAAACAGAAACGGAATCTGACAAAACTGAATATATTTCTGAAAGAAATTTTAACTGTGCAGATTGTGGAAAAGGATTCTATAACAAAAAGGAATTGATAATCCACATGAAGATGCATTCAAAAagattTAAAAGAACTTATTTAAGAAACAACCATAGAAAAGTGCACACTAGAGTGAAGATAATTGGGGGTGCGAAACTCAGATACAGCTGCAGTCGTTGCGATAGAGTTCTGACTTCTCACTCGGCACTGAGCAGTCATATGAAAACACACACAGGAGAAAAACCGTACTCCTGTAAGTACTGCGGTAAAAGTTTTCCTTACGTCAGCAGCTTAACTGTACATACACGGTTACACACAGGAGAAACGCCGTTTATTTGTCCTATATGCAATAAAGGCTATCGCAGTTCCACTAGTCTCAAAAAACACAAAGAAGTGAAACACTACGAAATGGACGATGTTAAACAGGAAAGGAACGAAAATGATACCTCGTCTAGCGATTTGGATAAAAGGGAATGTAAAATTTGTAAGAAGGTGCTCCACAAACACGGATTTGGAACACACATGAGAATTCACACAAttgaaaagaagaaatttgtATGTACTTTCTGTAACAAGAATTTCCAAAAGAATTCTCATCTGGAGCGACATATTAGGATACATACAGGAGAAAGGCCGTATATCTGTAAATTATGCGGTAAAACCTTCAAACAGGACGGCGACCTGAAGAGACACGTATTCATACACACAGGTGAAAAACAGTTCCAGTGCCAACATTGCGGCAAGCAGTACTATACCAAGGGATCTTTGGATACTCACATGATGGTGCATACAGGAACTAAACGACCTGTCAGTTACGAGTGTAACATTTGTATGAAATCTTTCAGGCAGTGTACCCACTTCAAAACGCATATGAACTCACACACAGGAGAAAAGCCTTATTTGTGTACCATTTGCGGAAAATCCTTTACGGCAAGCGGTACGCTTAAAGTGCATACGAGAATCCATACAGGCGAAACTCCTTTCGTCTGTTCATATTGCAACAAAGGATACAACAATTCCAGTAGTTTAAAGAGGCACGTGATGAGGAATCACACCGGTGAGAAACCATACGTGTGCATGATTTGCCACAAGGCGTTTCACGATTCCACCAACTTGAAGAGGCACGTGAAACGGGTGCATTCGGTGTTGGAGATCAAGCAGGATAATGAAGCAGCAGAGTGCAGCAGTGTTTTCTAG
- Protein Sequence
- MDNYKYMDISINDFSKICRVCLLPNIVLFDAIELLNFYSKVIGIEVNQDDGLPKNICDSCGIELRKVACFIDKCKENDRFLTAILIQSKKDNSSPSCDAPDYESDAPFSTCGEPTIKLENEACSNNNMEPPEPLFKTETESDKTEYISERNFNCADCGKGFYNKKELIIHMKMHSKRFKRTYLRNNHRKVHTRVKIIGGAKLRYSCSRCDRVLTSHSALSSHMKTHTGEKPYSCKYCGKSFPYVSSLTVHTRLHTGETPFICPICNKGYRSSTSLKKHKEVKHYEMDDVKQERNENDTSSSDLDKRECKICKKVLHKHGFGTHMRIHTIEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKLCGKTFKQDGDLKRHVFIHTGEKQFQCQHCGKQYYTKGSLDTHMMVHTGTKRPVSYECNICMKSFRQCTHFKTHMNSHTGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSYCNKGYNNSSSLKRHVMRNHTGEKPYVCMICHKAFHDSTNLKRHVKRVHSVLEIKQDNEAAECSSVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00722305;
- 90% Identity
- iTF_00722305;
- 80% Identity
- iTF_00722305;