Elap017386.1
Basic Information
- Insect
- Euura lappo
- Gene Symbol
- -
- Assembly
- GCA_018257835.1
- Location
- JAEUYN010000824.1:142979-150177[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0029 11 6.4 0.0 31 63 105 137 90 146 0.78 2 8 0.00055 2.1 8.8 0.0 34 64 147 177 142 185 0.87 3 8 0.00062 2.4 8.6 0.0 34 61 186 213 182 224 0.86 4 8 0.0012 4.5 7.7 0.0 34 64 225 255 220 263 0.86 5 8 0.0074 29 5.1 0.0 34 58 264 288 259 299 0.85 6 8 0.00061 2.4 8.6 0.0 34 64 303 333 297 342 0.86 7 8 0.0035 14 6.2 0.0 34 64 342 372 335 380 0.84 8 8 0.15 6e+02 0.9 0.0 34 46 381 393 379 398 0.82
Sequence Information
- Coding Sequence
- ATGTGGGCGTATGTTTTCTTCGCCAAAACGCAAAAGTATAGCGTAGTAAACGTTAAATCAATAAATAACTTTAATCGTGACGAACCGTTCAGTGATAAAAAAGTGTATTCACTCGAGTTGGCTGATGGGTCTCAGGGTAAATGCCAGGTGTTGCTTTTAGCAGGAACAGTTGAAAAATTGAACGAACTGATTGAGGCCAAGAGAGTTTCAGTTCCGAAATTGAGCCAATCTATGTACGAAGATGACCCCGATGCTACAAAGTACGCTAAGAAGGTACAAAAAGCACCAATGAAGAAACGAAGGGTAAATACGAATAAAGAATACTACATAGAACCGATAGGAAAACGATCGGAAACCGTAGAACACATCAAGGGGTTCCCGCGAGAAAAGATAGGACACCATAGGATCCGAATACTGACGATAGATACAAATAAAGAATACTACGTAGAACCGATAGGAAAACGATCGGAAACCGTAGAACACATTAAGGGGTTCCTGCGAGAAACGATAGGACACCATAGGATCCAAATACTGACGATAGATACAAATAAAGAATACTACATAGAACCGATGGGAAAACGATCGGAAACCGTAAAACACATTAAGCGGTTCCCGCGGGAAACGATAGGACACCATAGGACCCGAATACTGACGATAGATACGAATAACGAATACTACATAAAACCGATAGGAAAACGATCGGAAACCGTAGAACACATTAAGGGGTTCCTGCGAGAAACGATAGGACACCATAGGATCCGAATATTGACGATAGATACAAATAAAGAATACTACATAGAACCGATAGGAAAACGATCGGAAACCGTAGAACACATTAAGGGGTTCCCGCGGGAAACGATAGGACACCATAGGACCCGAATACTGACGATAGATACGAATAACGAATACTACATAGAACCGATAGGAAAACGATCGGAAACCGTAGAACACATTAAGGGGTTCCTGCGAGAAACGATAGGACACCATAGGATCCGAATACTGACGATAGATACGAATAACGAATACTACATAGAACCGATAGGAAAACGATCGGAAACCGTAGAACACATTAAGGGGTTTCCGCGAGAAACGATAGGACACCATAGGATCCGAATACTGACGATAGATACGAATAAAGAATACTACATAGAACCGATGGGAAAACGATCGGAAACTGTAGAACACATTGAAGGAAATCCCGCGAGAAACGATAGGACACCATAG
- Protein Sequence
- MWAYVFFAKTQKYSVVNVKSINNFNRDEPFSDKKVYSLELADGSQGKCQVLLLAGTVEKLNELIEAKRVSVPKLSQSMYEDDPDATKYAKKVQKAPMKKRRVNTNKEYYIEPIGKRSETVEHIKGFPREKIGHHRIRILTIDTNKEYYVEPIGKRSETVEHIKGFLRETIGHHRIQILTIDTNKEYYIEPMGKRSETVKHIKRFPRETIGHHRTRILTIDTNNEYYIKPIGKRSETVEHIKGFLRETIGHHRIRILTIDTNKEYYIEPIGKRSETVEHIKGFPRETIGHHRTRILTIDTNNEYYIEPIGKRSETVEHIKGFLRETIGHHRIRILTIDTNNEYYIEPIGKRSETVEHIKGFPRETIGHHRIRILTIDTNKEYYIEPMGKRSETVEHIEGNPARNDRTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -