Basic Information

Gene Symbol
stc
Assembly
GCA_963920795.1
Location
OY987207.1:33518231-33527588[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.9 3.8e+04 -4.0 1.6 15 19 316 320 315 320 0.81
2 14 0.054 1.1e+03 0.9 0.2 4 10 349 355 348 358 0.95
3 14 6.2e-07 0.013 16.7 14.5 4 19 363 378 360 378 0.94
4 14 5.9e-05 1.2 10.4 15.3 3 18 416 431 414 432 0.91
5 14 0.63 1.3e+04 -2.5 1.2 8 13 437 442 436 443 0.79
6 14 1e-10 2e-06 28.8 13.5 1 19 472 490 472 490 0.98
7 14 7e-07 0.014 16.5 14.1 4 18 538 552 531 553 0.86
8 14 0.0039 80 4.5 9.0 1 11 593 603 593 604 0.96
9 14 0.33 6.7e+03 -1.6 0.6 4 10 608 614 607 614 0.91
10 14 3.8e-10 7.8e-06 26.9 14.8 1 18 620 637 620 638 0.97
11 14 2 4.1e+04 -11.3 14.1 10 18 685 694 671 695 0.75
12 14 2 4.1e+04 -4.3 1.5 9 13 701 705 700 706 0.79
13 14 1.4e-08 0.00028 22.0 11.3 1 17 731 747 731 753 0.93
14 14 1.3e-07 0.0027 18.8 14.8 1 19 763 782 763 782 0.96

Sequence Information

Coding Sequence
ATGTCAGAACTTCCACAATCTGAAAACGGCGACCGGAGTGCGGCCAAAAGCACCACGGCCAGCGCCGAGAACTACGTCGACTTCAATCAGTTTCTGTTGCAGCACAACTTAGCGGGTCCGGCGGTGGACGCGGGTGGTGCTGACATGGCAAACTACTTCGGATTCTTCCCCACGCAGGTGCCTTACATGCCCGTGCCGAACATGTTTTATAACGGCTTTGATACCCAAATTATACCATCACTCACTGACTACCAGAGGGACTTGGCCCTCTCTTCAAACCTGCTTCCAACAGCCGCTGAGTTCATTCCCAGGTTCAGCAATTTGGAGATCTCCGAGCCTGAAGCTGCCGATCCTGTAATACCAAAAGCTGCTGTAATCACACCAGCACCCGTGGGAAGTGATTCTGCGGTGCCTGAACACCCAATCGATGGACAGAACAACAACGAGGAAAGGATTGCGCAAAGGAGCCACACTGGGGCCATCAATAAATCCTACGGTCGAGGTCGTCACAACGGCCACGATCGCTACGGAAGTGGACGAAACTCTGATTCAAGATATTACCAGAATGGGAATTATTCGAATCGAAATAGGCAAAATTACGAGAGGAATTTAAAACGGCACGACAACCATTGGAAAAGTCGAGGAGAATTTCTCGAAAACAAGCGCGAAAACGGCAACTCCGATGGAAAAACCTCAAGCAAATTAGAGTCGAATACAAAGAGCAATGCGATCCCCATTATTAGCGAGGATGCATTCAGCGAAAAGCTGTCCCAGCGCGAGAAACTCATCCGCGAGATTGAAGGCCGTCGGTTGGAGTGTCTCGTCTGCGTTGAGCCTATAAAATTTCACCAATCCGTGTGGTCCTGCGTTAGTTGCTACACCATCATTCATCTCAACTGTGTGATTAAATGGGCGTCTAGCTCAAAATCCGAAGACGGCTGGCGTTGTCCAGCTTGTCAGAATGTAACAAAGGACGTACCCCGCGATTATTATTGCTTCTGCGGGAAAGTGAAGAATCCTCAGTACAACCGCAGCGACGTAGCCCACAGCTGCGGGGAGGTTTGTGGCCGCAAGACCAACTGCGATCATTCGTGCACTCTCCTTTGCCATCCAGGACCATGTCCGCCCTGCCAGGCGAACGTGACCCGCATGTGCGGCTGCGGCAGGACCTCTAAGGTAATGCAGTGCTACATGAAGGACGACATCGAGTGCGACGCAACCTGCGAGAAGCTACTTAACTGCGAGCTCCATCGTTGCGATAAAACGTGCCATCATGGAAAGTGTCCCAAATGCGAGAAAGAGGTCAGTCAAAAATGCCATTGTGGCAGGCAAGAAAGGCAGGTGGCCTGCACAAAGGAGTCAAACGAAAAGAAGAACTATTCTTGTGGGAAACCCTGCAGCCGGGAACTAGCCTGCGGCAACCACAAATGCAAAGACGTTTGCCACTCCGGTGACTGCAAGCCATGCAAGCTGACTCCGGAGATGGTCAAGACTTGCCCTTGCggcaaaatgcaaattgagCCTGGTCAGCGGGAAGACTGCCTGCAACCAGTCCCAACTTGTACTGGAATCTGCGGGAAAACTTTGAAGTGTGGCCAACCAGGCTCTCCTCACCGCTGCATCAGCAAGTGCCACACAGGTAACTGTCCGCCTTGCAACAAACAGACGTCTGTAAAGTGCCGCTGTGGCCACATGGACCAGATGATCAAATGCCGTCAGCTATCTTCTCGAGCTGACGACGCGCGATGCAAGAAGAGGTGCACTAAGAAAAGAACCTGCGGCAGGCACAAATGCAACCAAGAGTGTTGCATCGATATTGATCATATCTGTCCACAGATCTGCAACTTCTCGCTTTCTTGTGGAAAGCACAAATGTGACCGACCGTGTCACCGTGGAAATTGTCCGCCATGCTATCGAAGCTCGTTCGAAGAGCTCTACTGCGAGTGCCGGAATCAAGTGATTTACCCGCCAGTACCCTGCGGAACTAAGCGACCACCCTGTTCTATGCCATGCTCGCGGCAACACCCTTGCGATCACCCTGTGCAGCATAATTGCCACTCTGCTCCTACCTGCCCGCCCTGCATGATGTTCACAACGAAATTCTGCCACGGTGGGCACGAACAACGCAAAACCATTCCGTGCAGCCAACCCTCATTTAGTTGTGGAATGCCATGTGGCAAAAAGTTGAGCTGCGGACGGCACAAGTGCATCAAGGCGTGCCACGAAGGCCCTTGTCAGACCGAAGGGGACATCTGCAAGCAGAACTGCACAAAAGCGAGGATGGTTTGCGGACATAAATGCAACGCTCCCTGTCACGACGGCGATTGCCCAGAAACGCCCTGCAAGGAAATGATAGAAGTGACCTGCGAGTGTGGAAATCGAAAACAAATGCGATCGTGCCAAGACATCGCCAGCGAATACCGTCGCATCGCAACTGCACAGTTGGCCTCGTCAATGCTTGAGATGCAGCGTGGAAATATGGTCGAGTTGAGCGACATAATGGGTCCCATCAAAATGACCAATAACAAAAcACTTGAATGCAACGAGGAGTGCAAGGTTCTCGAGAGGAATCGGCGCCTAGCCATCGCCTTACAGTCTCGAAACCCAGAGGTGCCTTCAACAAAAATTCTGACTCGATACTCGGACAACATAAAAGGCTGGGCGAAAAAGGATCCTCAGCTAGTTAAGACGATACACGACGCCTTAACAACCCTGGTCAAACTGGCGAAGGAGAGTCCCCAAAGGTCGCGAAGTCATTCATTCCCCACAATGAATCGAGACAAACGCAGCCTCGTTCACGAAATGTGCTCCATGTTCGGGGTGGAATCAGTTGCATATGATGCGGAACCGAACAGGAACGTTGTTGCTACCGCACACAAGGACAGGtGTTGGCTGCCTGCAATGAGCATCATGGAAGTGATGCAGCGGGAAAGCGGCCAGAGGCGTGTCCCTGTACCGAACAACAACGCTTGGGGTCTCAAGAGATAA
Protein Sequence
MSELPQSENGDRSAAKSTTASAENYVDFNQFLLQHNLAGPAVDAGGADMANYFGFFPTQVPYMPVPNMFYNGFDTQIIPSLTDYQRDLALSSNLLPTAAEFIPRFSNLEISEPEAADPVIPKAAVITPAPVGSDSAVPEHPIDGQNNNEERIAQRSHTGAINKSYGRGRHNGHDRYGSGRNSDSRYYQNGNYSNRNRQNYERNLKRHDNHWKSRGEFLENKRENGNSDGKTSSKLESNTKSNAIPIISEDAFSEKLSQREKLIREIEGRRLECLVCVEPIKFHQSVWSCVSCYTIIHLNCVIKWASSSKSEDGWRCPACQNVTKDVPRDYYCFCGKVKNPQYNRSDVAHSCGEVCGRKTNCDHSCTLLCHPGPCPPCQANVTRMCGCGRTSKVMQCYMKDDIECDATCEKLLNCELHRCDKTCHHGKCPKCEKEVSQKCHCGRQERQVACTKESNEKKNYSCGKPCSRELACGNHKCKDVCHSGDCKPCKLTPEMVKTCPCGKMQIEPGQREDCLQPVPTCTGICGKTLKCGQPGSPHRCISKCHTGNCPPCNKQTSVKCRCGHMDQMIKCRQLSSRADDARCKKRCTKKRTCGRHKCNQECCIDIDHICPQICNFSLSCGKHKCDRPCHRGNCPPCYRSSFEELYCECRNQVIYPPVPCGTKRPPCSMPCSRQHPCDHPVQHNCHSAPTCPPCMMFTTKFCHGGHEQRKTIPCSQPSFSCGMPCGKKLSCGRHKCIKACHEGPCQTEGDICKQNCTKARMVCGHKCNAPCHDGDCPETPCKEMIEVTCECGNRKQMRSCQDIASEYRRIATAQLASSMLEMQRGNMVELSDIMGPIKMTNNKTLECNEECKVLERNRRLAIALQSRNPEVPSTKILTRYSDNIKGWAKKDPQLVKTIHDALTTLVKLAKESPQRSRSHSFPTMNRDKRSLVHEMCSMFGVESVAYDAEPNRNVVATAHKDRCWLPAMSIMEVMQRESGQRRVPVPNNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01256781;
90% Identity
iTF_00937703;
80% Identity
-