Ehis016083.1
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949748255.1
- Location
- OX456523.1:233499498-233515138[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-23 2.2e-19 70.2 0.1 4 76 419 489 416 490 0.93 2 2 0.023 1.9e+02 3.2 0.0 37 58 922 943 919 976 0.87
Sequence Information
- Coding Sequence
- ATGGGACGCCGGTGTTGTATAACCGGTTGTACATCAACTTCACGCCTGCCCGAACATCATGGTGTTACCTATCATTCTTTTCCAGTGGATGAAAATACACGCTCTATTTGGataagaaatacaaaattaagtGCTGATCGTAACATTACTAAAAGTGTTTTAGTATGCTCCAGACATTTTCGTCGTGCCGACTTCCAACCACAACGCagtggaaaatatttgttaaagcaAAAGGTATTTCCTACCGTCTTTCCTTGGGGAAAAATAGAGACCACTCAAATAGAGGAAGATTTAGAATTTCTAAATTCTGCAGGTGCAAGTGCACCCAATAATCTACTGACTCCCTCATCTACGGTAGATGAAGATACAAAAGCTACAGTGGCCGCCACAGTGGCACAAATAATGGCACAGACGGCTGAATTAAATGCAGCTGCTGGTATAAAGTTAGAAAAACCCGAAGATGATTTAGATAATTCACAGACAAATAATTTACCCACAGATCCAGCTACTCCACCTGGTGTAAAATTTGAAACCGTTACCTCATTTAATCCTGGAGCCCGCTTAGAAGCACAAGATTTTGATGGTATGTGGCATACAGCTCGTATTGTTGAAGTTGATAATGATGATCGTGAAGTTTTAATCAAATTCGAGAAATCCGGAAAGAATAAATCTACTATGGCTGGCACAGAAGAATGGATACCCATGAATTCTTCAAGGCTACGCCAACGCATTTCTaccaaaccaattttaaactttacttTGGAAGAAAAATGTTTAGCCAGATGGTCGGGCCCACGTAAATTTCCCGGGACTGTTAAGAAAATCTTACCGAATGATACTTATGAGATATTATTCGATGATGGTTACATTAAAAATGTTAGAGCTATACATATGAACAAATCATCACAGGCTAAAAATGCTCAACCGGTAGTTGAAAATGTTCCCGAAGAAATTCCCGTAATTATACCTACTACATCATCAACACCTTTGGATACTCCAGTAACACCGGTGACACCATCTACTTCAAGTGTTAAGAGACCTTCGTCTGGTCAGAATTCTGGTTCACAGGCCAAAAAACGTGCACCCAATGGACCACGAAAAGATTGGCCATTATTGGATTTATCGAAATTGGATTTGGCTTCTTTAAATCTTCCGGAAATTCCTAGAGATGGTGAATGGACTTGTCATTGGGTTAATGATCAACCTATAGGTCGTGAGGGTTATTTGGTGGTAGGAGAACATCGTAAACCCACTGTTGTGGTAGAAGATTGGCGTTTGCCACCCGGTTGGATTAAGCATATGTATCAACGTTCAAATGTATTGGGTAAATGGGATGTTATATTGGTTTCACCAAATGGCAAACGTTTTCGTTCAAAGTCAGACCTTAAAACCTATCTCGAGGAACTCGGTCAGGTGTATAATCCTGATATTTATGATTTTAGTATTCATCGACGTAGAGCTAAAGATATAAATTGTTATGTTCACACACCAGGTTATGTACCGCAACAACCGGTGAAAACTAAACAATCTTTAAATTCATCAATAGATTCAAATATGGATACGAGTATAGTTGAATCTTTAGCAACTAGTGTAACATCACCATATATGGAAACTCCAATAGCTGAACCATTACCGCCCATAGAATTGCTAACAACTTCTTCTACTAGTTTGTCGGCGGAAGATAAAAGTGTTACCCAAGTTGAGGCCGAGGTACCAAAACAACTTTTAGAATCAGCCGAGGTTAGTTCAACACCAACACCTACATCGACTCCAACGGTGGGCTTAAAAGAAGAAATTGCTGTTTCTACAGATTGTGCTACTCCCCCAGTAGTTGATGCGATTGCAACGGAATTACCAGTTGTTAGTCAATCAACAGCTGAAGGTGGTTTtgcacTCATTGGTGGTTTAAAAGTTCAAATCATTGATAATTTATTCCGTTGTCCCGAGGAGGGTTGCTTAAAAAATTTCCGCAAAgaaaatcatttacaaattcATGTTAAACATTATCATCGTAATTTAGCcaaATTACTTGGTGCTTGTCCTAAAATGTTAGAATTAGCTGAGAAACGTACACATCCCGTCGAAAGTGAAGCCAATGAGCCAGTGCCCAAAAATCAAATACCCAATCAACAATTCTTTGCTAAATTACATCAACAAGATTTAGAACAAACACGAGCACATCGCAGAAGTTTAGGCACCTTAAAACCTACCTTGGAAGCCGGCGGTGCTAGTCCAGAAATTAAAACCGATTCAGTGGAGGGGGCTACAATAAAAACTGAAGATAGCTTGCAATTGGATAGTTCTCTTAATGAAACATCGTTGATCAATACAACCACCGCATCCAGTACAGTAATCGATAATTCATATGCTTCGACCCCAACAGCAGATAATTCAGTGTCAACCGAAAATGTTTTAGATGATATGCCATTAAGTAAAAGGGCTAAATTTCCACCATCAAAGAGATCTTCAGGAGCAAGAAAAAGTAATCGTCAAAGGACTACTAGAAAATATCTAACAGCAGCTCAAGCTACGGCTGGGGTAGTGGCCCCAGCAAACGCAACTCCACCTACTCCGTTACCTGTAGTGACAGGGGACTCTACATTTAGTGGTGTGGTAGCTGAATTTGAAGAAACACGTCATTCGTTTAATGCCACCCCCGAAATAAATAAAGAGGTTAAAAAACGTAAACCTGCTTTGGCATCCAATACACCCATGAGTAGTGTTGATTCTCCCATTACAGCCGATTCGGGTTCAAGTTCTTTTCAGCCTAATTCCACAGAAGCAGAAACCATCAATCAGGTACCACAATATATTAAAGAGAAtggtgaaattattaaaattgttcacATGAGACAAgaagaaattatcaattgtctATGCAACTATGGCGAAGAAGATGGTTTAATGATACAATGTGATTTGTGTCTCTGTTGGCAACATAGCGGCTGTAATGGCATAACAAAAGAATCCCAAGTTCCCGACAAATATGTCTGTTACATTTGTCGTAATCCTCAAAGATGCCGCGAATCTGTACGTTTTAAACATGATCAAGATTGGCTATATGATGGCAAACTGCCAGTGGCCAATTTCCATAACTCCAACAATGCccaattaaataaaagatttgaatACCTTAAACGGTCTCATATCCTGACGGGTAATCTATGCGAATTGAAGAATTATATGCATTCTTTACGAGTTAAAATGAATATAGCCAATAATAAATATCATCCAAAACTTTATCTATGGGCTAAAAAATGGGATGAAGATGTGGAAGCAgttaaaagtgaaattaaaaatgaattcgaattggaagaaaatgaaaataacatgAATTTATCACTAAGCCcaacaacgaaaaaaattaaaccagaACCTACTACACCGGCAACATTTGTACCGAATATACCACAGCCTGAGGCGCCTATAGATCCAAAAGAATGTCAACAACGTTTATTGGAACATATTAAAATACAACAGCAATTAGTTATAAATCGTTTAGGAGATATAGAAACGGCTATAGATGttTTGGAACGTGAAGATGATATGCCCGATTTACGTTCTGCTGATTTGGGTGTTACCAAAGATGTTTTGGCTGCTTTTATTAAAGAACTGGATAGTGTCAAACAAATGGCCAAATTGAATGCTTTGGAACATACTAAATTGGCATATAAGAATCCTGTGTCACAcatcaaataa
- Protein Sequence
- MGRRCCITGCTSTSRLPEHHGVTYHSFPVDENTRSIWIRNTKLSADRNITKSVLVCSRHFRRADFQPQRSGKYLLKQKVFPTVFPWGKIETTQIEEDLEFLNSAGASAPNNLLTPSSTVDEDTKATVAATVAQIMAQTAELNAAAGIKLEKPEDDLDNSQTNNLPTDPATPPGVKFETVTSFNPGARLEAQDFDGMWHTARIVEVDNDDREVLIKFEKSGKNKSTMAGTEEWIPMNSSRLRQRISTKPILNFTLEEKCLARWSGPRKFPGTVKKILPNDTYEILFDDGYIKNVRAIHMNKSSQAKNAQPVVENVPEEIPVIIPTTSSTPLDTPVTPVTPSTSSVKRPSSGQNSGSQAKKRAPNGPRKDWPLLDLSKLDLASLNLPEIPRDGEWTCHWVNDQPIGREGYLVVGEHRKPTVVVEDWRLPPGWIKHMYQRSNVLGKWDVILVSPNGKRFRSKSDLKTYLEELGQVYNPDIYDFSIHRRRAKDINCYVHTPGYVPQQPVKTKQSLNSSIDSNMDTSIVESLATSVTSPYMETPIAEPLPPIELLTTSSTSLSAEDKSVTQVEAEVPKQLLESAEVSSTPTPTSTPTVGLKEEIAVSTDCATPPVVDAIATELPVVSQSTAEGGFALIGGLKVQIIDNLFRCPEEGCLKNFRKENHLQIHVKHYHRNLAKLLGACPKMLELAEKRTHPVESEANEPVPKNQIPNQQFFAKLHQQDLEQTRAHRRSLGTLKPTLEAGGASPEIKTDSVEGATIKTEDSLQLDSSLNETSLINTTTASSTVIDNSYASTPTADNSVSTENVLDDMPLSKRAKFPPSKRSSGARKSNRQRTTRKYLTAAQATAGVVAPANATPPTPLPVVTGDSTFSGVVAEFEETRHSFNATPEINKEVKKRKPALASNTPMSSVDSPITADSGSSSFQPNSTEAETINQVPQYIKENGEIIKIVHMRQEEIINCLCNYGEEDGLMIQCDLCLCWQHSGCNGITKESQVPDKYVCYICRNPQRCRESVRFKHDQDWLYDGKLPVANFHNSNNAQLNKRFEYLKRSHILTGNLCELKNYMHSLRVKMNIANNKYHPKLYLWAKKWDEDVEAVKSEIKNEFELEENENNMNLSLSPTTKKIKPEPTTPATFVPNIPQPEAPIDPKECQQRLLEHIKIQQQLVINRLGDIETAIDVLEREDDMPDLRSADLGVTKDVLAAFIKELDSVKQMAKLNALEHTKLAYKNPVSHIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165527;
- 90% Identity
- iTF_00716754;
- 80% Identity
- iTF_00716754;